Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02450 ATGATATCATTAACCAACACAAAGATATCGTTCTTCAATCGTGAAATGCACCAATTAGTTTATCAACTATCAATTGGTGCTGCATGTGGACTCTCATGGCCTTCTGATAGAATTATCATACAAATTCTTGATGATTCAACTGACCCAGCAATTAAGGAGTTGGTGCAGGTGGAATGTCGTATATGGGAAAGCAAAGGTGTGAACATAAAGTATGAAATTAGGGACAGCAGAAATGGGTACAAAGCAGGAGCTCTAAAGGAGGGAATGAAGCATAGCTATGTCATACAATGTGATTATGTTGTCATCTTTGATGCTGATTTTCAACCAGAACCTGATTTTCTCTTCCAAACCATCCCTTTCCTTATAAATAATCCTGAAATTGGTCTCGTTCAGGCTCGTTGGACATTTGTGAATGCGGATGAATGCATGATGACGAGGATGCAACAAATGTCACTTGATTATCATTTTAAGGTGGAACAAGAAGTGGGGTCTTCCACTTATGCCTTCTTTGGCTTCAATGGGACTGCTGGTGTGTGGAGAATTACGGCAGTGAATGAAGCTGGTGGGTGGAAAGATAGAACCACAGTTGAAGATATGGATTTATCTGTACGTGCTAGTCTCAAAGGATGGAAATTTTTATTCCTCTCTGGTGTACAGGTTAAAAGTGAATTGCCAAGTACTTTAAAGGCCTATAGGTACCAACAACATAGATGGTCATGTGGGCCGGCCAATCTTTTCAGGAAAGTGGTCATGGAGATTTTCACAAACACGAAAGTGTCTTTGTGGACAAAGTTACATGTTGTTTATAGTTTTTTCTTTGTTCGGAAGATTGTGGTCCACATAAATACATTTGTGTTCTATTGTGTGGTGTTGCCTGCAACTGTTATGGTGCCTGAGGTTGTAGTCCCTAAATGGAGTTGTGTTTATATCCCTTGCATCATGACACTTCTAAAAGCTGTTGGAACTCTAAGGTCATTCCATCTACTTGTCTTTTGGGTTCTCTTTGAAAATACCATGTCTCTACATCGAACAAAGGCAACAATTATAGGTCTACTAGAGACTAGTAGAGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCTCTTCTTAAGGATAAAATTGGTGGTAATAAAGTACTCAAAAAGTATCGATTTAGCATTGGAGATAGGATTGACATGACAGAACTTTTTGTTGGATTCTACCTCCTATTTTGTGGCTGCTATGATTTTATGTATGGGAAAAGTTACTTCTTCATATTCCTATACATGCAAGCGATTACTTTCTTCATCCTAGCATTTGGATATGTTGGCACTTTTGTTCCTAAATCCTAG 1335 0.3865 MISLTNTKISFFNREMHQLVYQLSIGAACGLSWPSDRIIIQILDDSTDPAIKELVQVECRIWESKGVNIKYEIRDSRNGYKAGALKEGMKHSYVIQCDYVVIFDADFQPEPDFLFQTIPFLINNPEIGLVQARWTFVNADECMMTRMQQMSLDYHFKVEQEVGSSTYAFFGFNGTAGVWRITAVNEAGGWKDRTTVEDMDLSVRASLKGWKFLFLSGVQVKSELPSTLKAYRYQQHRWSCGPANLFRKVVMEIFTNTKVSLWTKLHVVYSFFFVRKIVVHINTFVFYCVVLPATVMVPEVVVPKWSCVYIPCIMTLLKAVGTLRSFHLLVFWVLFENTMSLHRTKATIIGLLETSRVNEWIVTEKLGDALLKDKIGGNKVLKKYRFSIGDRIDMTELFVGFYLLFCGCYDFMYGKSYFFIFLYMQAITFFILAFGYVGTFVPKS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02450 444 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 18 439 - -
Trre1g02450 444 Pfam Glycosyl transferase family group 2 99 305 IPR001173 -
Trre1g02450 444 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 282 IPR029044 -
Trre1g02450 444 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 13 225 IPR029044 -
Trre1g02450 444 CDD CESA_CaSu_A2 20 242 - -
Trre1g02450 444 FunFam Glucomannan 4-beta-mannosyltransferase 9 3 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02450 Trre-Chr1 19819790 19827729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02450 8 443 Miscellaneous Gene Families AT5G03760 72.248 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02450 K13680 - gmx:100782772 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02450 1 19819790 19827729 Trre7g01490 7 11042735 11048549 ECH
Trre1g02450 1 19819790 19827729 Trre1g02450 1 19819790 19827729 ECH
Trre13g04408 13 51653845 51660179 Trre1g02450 1 19819790 19827729 PCT