Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04408 ATGGATCATTTTTCTTCTACTACTACTACTACTACTATACCTTTTGCATTTCAAGGAGCAAAAGATGACATAACCATGCAATTTTCTTTGATTTGGAGTCAAATCAAAGCACCATTGATTGTTCCATTACTAAGAATATCAGTGTTTTTGTGCTTAATAATGTCGGTTATGATGGTTATTGAAAGAGTTTATATGGGTGTTGTCATTAGTCTTGTGAAGCTATTTGGAAGAAAACCTGAAAAACGTTACAAATGGGAACCAATTAAGGATGATATTGAGTTTGGAAACTCTTGTTATCCAATGGTTGTTGTTCAAATCCCTATGTACAATGAAAGAGAGGTTTATCAATTGTCAATTGGTGCTGCATGTGGTCTTTCATGGCCTTCTGATAGAATCATTATACAAGTTCTTGATGATTCCACTGACCCAACAATTAAGGAATTGGTGCAAATAGAATGCCAAAGATGGGCAAGCAAAGGTGTGAATATTAAGTATGAAGTTAGGGACAATAGAAATGGATACAAAGCAGGGGCATTAAAAGAAGGAATGAAGCATAGCTATGTGAAACAATGTGATTATGTTGCTATCTTTGATGCTGATTTTCAGCCAGAGCCTAATTTCTTATGGCGTACAGTGCCATTTATGGTGCATAATCCTGAACTTGGTCTTATTCAGGCTAGATGGAAATTTGTGAATGCTGATGAATGTATGATGACCAGAATGCAAGAGATGTCACTGGATTATCATTTTACAGTGGAACAAGAAGTGGGCTCTTCCACCTACGCCTTCTTTGGCTTCAATGGGACCGCGGGAGTTTGGAGAATTGCGGCGCTAAATGAGGCCGGTGGATGGAAAGATAGGACCACGGTTGAAGATATGGACTTGGCTGTTCGAGCTAGTCTCAAAGGATGGAAATTCTTATACTTGTCTAACTTGAAGGTTAAAAATGAATTGCCAAGTACTTTCAAGGCCTACCGCTACCAACAACATCGTTGGTCTTGCGGACCAGCCAATCTTTTCAGAAAAATGGTCATGGAGATAATTAGAAACAAGAAAGTGTCCTTGTGGAAGAAGATACATGTCATTTACAGCTTCTTCTTTGTTAGAAAAGTCATAGCACACATCAATACATTTGTGTTTTATTGCATTGTGCTACCTGCAACTGTTTTAGTACCCGAGGTTGCGGTTCCTAAATGGGGAGCCGTTTATATCCCTTCAGTAATCACCCTTCTCAATGCAGTCGGAACTCCAAGGTCACTCCATTTACTTGTCTTTTGGATTCTATTTGAGAATGTTATGTCTCTACATCGAGCGAAGGCTACTATTGTTGGTCTACTGGAGACTAGTCGAGTGAATGAATGGATTGTGACTGAGAAACTCGGAGATGTTCTTAAGGTTAAAGCAGGAACTAAAGCACTCAAGAAACCTCGATTCAGGATTGAAGACAGGATTCACTTGTTAGAACTTGGTGTTGGAATGTACCTCTTTTTTATCGGTTGCTACGATGTTATGTTCGGGAAAAACCAGTTCTTCATTTTTCTCTTTATCCAAGCATTCGCCTTCTTCATCATGGCATTTGGATATATTGGAACTTTTGTTCCCAACTCCTAG 1611 0.3892 MDHFSSTTTTTTIPFAFQGAKDDITMQFSLIWSQIKAPLIVPLLRISVFLCLIMSVMMVIERVYMGVVISLVKLFGRKPEKRYKWEPIKDDIEFGNSCYPMVVVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQIECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPNFLWRTVPFMVHNPELGLIQARWKFVNADECMMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIIRNKKVSLWKKIHVIYSFFFVRKVIAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSVITLLNAVGTPRSLHLLVFWILFENVMSLHRAKATIVGLLETSRVNEWIVTEKLGDVLKVKAGTKALKKPRFRIEDRIHLLELGVGMYLFFIGCYDVMFGKNQFFIFLFIQAFAFFIMAFGYIGTFVPNS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04408 536 SUPERFAMILY Nucleotide-diphospho-sugar transferases 99 378 IPR029044 -
Trre13g04408 536 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 21 531 - -
Trre13g04408 536 FunFam Glucomannan 4-beta-mannosyltransferase 9 91 319 - -
Trre13g04408 536 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 93 315 IPR029044 -
Trre13g04408 536 Pfam Glycosyltransferase like family 2 101 335 - -
Trre13g04408 536 CDD CESA_CaSu_A2 100 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04408 Trre-Chr13 51653845 51660179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04408 9 535 Miscellaneous Gene Families AT5G03760 81.061 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04408 K13680 - gmx:100782772 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04408 13 51653845 51660179 Trre7g01490 7 11042735 11048549 ECH
Trre13g04408 13 51653845 51660179 Trre13g04408 13 51653845 51660179 ECH
Trre13g04408 13 51653845 51660179 Trre1g02450 1 19819790 19827729 PCT