Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03273 ATGAGTTCCGGTGATGGCCTCCTCAGTATCGAACCTATCGAACTCACCTTCCCCTTTGAGCTGAAGAAGCAGATCTCGTGTTCTCTTCAATTGTCTAATAAGACTGATAGCTATGTAGCTTTCAAGGTTAAAACAACCAATCCAAAGAAGTATTGTGTTCGTCCAAACACTGGAATTGTCATGCCAAGATCTACCTGCGATGTTATGGTTACCATGCAAGCGCAAAAAGAAGCTCCGGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACCAATGATGGTGTCAGTCCGAAAGACATCTCTGCAGATATGTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGGTGTATGTCTCTCCGCCGCAACCACCATCTCCAGTTGCAGAGGGTTCTGAGGAAGGGTCGTCGCCGAGAGGTTCTGTTTCAGAAAATGGAAATGTCAACGGTCCTGACTTCTCACAAGTATCGAAAGGATTTGCTGAACGACCTGAGGCTCAAGAAAAATCTGCAGAGGCAAAAGCTCTTATCTCAAGGCTGACTGAAGAGAAGAATAATGCAATTCAACAAACTAGCAGGCTCCGCCAGGAACTGGAGCTGCTGAAGCGTGAGGGAAACAAAAAACGTGGTGGAGTGTCATTTATCATTGTCATATTAATCGGCTTACTTGGCATAATCATGGGGTATCTCATGAAGTCATGA 726 0.449 MSSGDGLLSIEPIELTFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVMPRSTCDVMVTMQAQKEAPADMQCKDKFLLQSVKTNDGVSPKDISADMFNKEAGHVVEECKLRVVYVSPPQPPSPVAEGSEEGSSPRGSVSENGNVNGPDFSQVSKGFAERPEAQEKSAEAKALISRLTEEKNNAIQQTSRLRQELELLKREGNKKRGGVSFIIVILIGLLGIIMGYLMKS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03273 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 7 127 IPR000535 -
Trre15g03273 241 SUPERFAMILY PapD-like 2 142 IPR008962 -
Trre15g03273 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 7 239 IPR016763 GO:0005789
Trre15g03273 241 Gene3D Immunoglobulins 2 131 IPR013783 -
Trre15g03273 241 Pfam MSP (Major sperm protein) domain 8 112 IPR000535 -
Trre15g03273 241 Coils Coil 171 212 - -
Trre15g03273 241 PIRSF VAMP_assoc_prot 1 241 IPR016763 GO:0005789
Trre15g03273 241 MobiDBLite consensus disorder prediction 144 162 - -
Trre15g03273 241 MobiDBLite consensus disorder prediction 130 180 - -
Trre15g03273 241 FunFam Vesicle-associated protein 1-1 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03273 Trre-Chr15 31582128 31589124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03273 - - gmx:100527687 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03273 15 31582128 31589124 Trre15g03273 15 31582128 31589124 ECH
Trre9g00504 9 3650715 3653585 Trre15g03273 15 31582128 31589124 PCT
Trre15g03273 15 31582128 31589124 Trre9g00579 9 4145074 4147780 PCT