Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00504 ATGTCCACCGGTGACCTTCTCAACATCGAACCCGTCGAACTCAAATTCACATTTGAGCTCAAGAAGCAGATCTCTTCTTCTCTTCAATTATCAAATAAGACTGATACCTATGTAGCTTTCAAGGTAAAAACGACCAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTTTTGCCACGATCTACATGTGATGTTATAGTTACCATGCAAGCGCAAAAGGAAGCTCCACCTGATATGCAATGCAAAGATAAGTTTCTTCTTCAAAGTGTAAGAGTAGATGATGGAACTGATCCAAAGGAAATTACTGCCGAAATGTTCAACAAGGAAGCAGGGCATGTAGTTGAGGAGTGCAAATTGAGAGTGGTGTATGTTGCTCCACCTCAACCTCCGTCTCCAGTCCAGGAAGGTTCTGAGGAAGGATCGTCACCTAGAGGTTCTGCTTCCGAAAACGGAAATGCAAATGGTGCTGACTCTGCGACGGCGATGAGAGCATTTACCGAACGAGAGTCTTCAGAAAAATCTGCAGAGGCAAAAGCTCTTATGTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAATAACAAGCTTCGTCAGGAACTGGACCTGCTGAAACGTGAAAGCAGCAAAAGTCGTGGGGGTGCCTCAATGATCTTTGTCATAATAATTGGTTTACTTGGCATAATTATGGGGTATCTGTTGAAGAAGACCTAA 723 0.4288 MSTGDLLNIEPVELKFTFELKKQISSSLQLSNKTDTYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVRVDDGTDPKEITAEMFNKEAGHVVEECKLRVVYVAPPQPPSPVQEGSEEGSSPRGSASENGNANGADSATAMRAFTERESSEKSAEAKALMSRLTEEKNNAIQQNNKLRQELDLLKRESSKSRGGASMIFVIIIGLLGIIMGYLLKKT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00504 240 FunFam Vesicle-associated protein 1-1 1 129 - -
Trre9g00504 240 Gene3D Immunoglobulins 2 130 IPR013783 -
Trre9g00504 240 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 236 IPR016763 GO:0005789
Trre9g00504 240 MobiDBLite consensus disorder prediction 136 158 - -
Trre9g00504 240 MobiDBLite consensus disorder prediction 127 158 - -
Trre9g00504 240 SUPERFAMILY PapD-like 2 141 IPR008962 -
Trre9g00504 240 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Trre9g00504 240 Coils Coil 176 210 - -
Trre9g00504 240 PIRSF VAMP_assoc_prot 1 239 IPR016763 GO:0005789
Trre9g00504 240 Pfam MSP (Major sperm protein) domain 7 112 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00504 Trre-Chr9 3650715 3653585 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00504 - - gmx:100527687 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00504 9 3650715 3653585 Trre9g00504 9 3650715 3653585 ECH
Trre9g00504 9 3650715 3653585 Trre15g03273 15 31582128 31589124 PCT