Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04686 ATGGCAACAGTCTCAAGCTTGGTTGGTGAAAAGCCAGTAGTGATATTCAGCAAGAGTACATGTTGCTTAAGTCACTCAGTAACATCGCTGATACGTAGCTTTGGCGCAAACTTAAGTGTTTATGATCTTGATAAAATCGAAAACGGGTCGCAAATTGAGAGTGAATTGCTTCAAATGGGGATTAAACCAAGTGTACCTGCTGTTTTTATTGGACAACAATTCAGAGGTGGTTCTAAGAAAATTATGAGCCTTCATGTTAGGAATGAATTGGTGCCAATGTTGAAGGAGGCTGGTGCTATATGGATGTGA 309 0.4013 MATVSSLVGEKPVVIFSKSTCCLSHSVTSLIRSFGANLSVYDLDKIENGSQIESELLQMGIKPSVPAVFIGQQFRGGSKKIMSLHVRNELVPMLKEAGAIWM 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04686 102 Gene3D Glutaredoxin 1 101 - -
Trre13g04686 102 CDD GRX_GRXh_1_2_like 12 93 - -
Trre13g04686 102 Pfam Glutaredoxin 13 74 IPR002109 -
Trre13g04686 102 NCBIfam glutaredoxin-like family 5 102 IPR011905 -
Trre13g04686 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Trre13g04686 102 SUPERFAMILY Thioredoxin-like 3 101 IPR036249 -
Trre13g04686 102 PANTHER GLUTAREDOXIN 1 102 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04686 Trre-Chr13 53928892 53929200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04686 1 102 Miscellaneous Gene Families AT4G15690 50.000 3.31e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04686 K03676 - gmx:100789514 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04686 13 53928892 53929200 Trre1g04603 1 52084628 52084915 PCT
Trre1g04605 1 52138542 52138844 Trre13g04686 13 53928892 53929200 PCT