Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04603 ATGGAAATGATTACAAGGATGGTGAATGATAAAGCTGTGGTGATATTCAGCAAGAGCACATGTTGTTTGAGTCACTCCATCAAGTCATTGATAAGAAACTTTGGTGCAAACCCAATTGTTTATGAGCTTGATGAGATGACAAATGGGATACAAATTGAAAGAGAATTGCTTCAATTGGGGTGCCAACCAAGTGTACCAGCTGTGTTTATTGGACAAAAATTCATTGGTGGCTCTAAAAGAATCATGACACTCCATCTTCGCAATGAGTTAGCACCAATGTTGAAATGA 288 0.3819 MEMITRMVNDKAVVIFSKSTCCLSHSIKSLIRNFGANPIVYELDEMTNGIQIERELLQLGCQPSVPAVFIGQKFIGGSKRIMTLHLRNELAPMLK 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04603 95 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Trre1g04603 95 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Trre1g04603 95 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Trre1g04603 95 SUPERFAMILY Thioredoxin-like 1 95 IPR036249 -
Trre1g04603 95 CDD GRX_GRXh_1_2_like 12 93 - -
Trre1g04603 95 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Trre1g04603 95 Pfam Glutaredoxin 13 75 IPR002109 -
Trre1g04603 95 NCBIfam glutaredoxin-like family 4 95 IPR011905 -
Trre1g04603 95 Gene3D Glutaredoxin 1 95 - -
Trre1g04603 95 PANTHER GLUTAREDOXIN 1 95 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04603 Trre-Chr1 52084628 52084915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04603 1 95 Miscellaneous Gene Families AT4G15690 54.737 1.12e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04603 K03676 - gmx:100816947 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04603 1 52084628 52084915 Trre1g04603 1 52084628 52084915 ECH
Trre13g04686 13 53928892 53929200 Trre1g04603 1 52084628 52084915 PCT
Trre1g04603 1 52084628 52084915 Trre13g04687 13 53939867 53940175 PCT