Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04404 ATGGCGGCGAATTCTTCTAATGGAGATCAACAAACAACCACAAAGCAACCTCCCTTGCCATCTCCGTTGCGGTTTTCCAAATTCTTTCAGTCCAATATGAGAATTTTGGTCACCGGAGGAGCTGGTTTTATTGGTTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTAATTGTAGCTGATAACTACTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGTCATCCGAGATTTGAGCTAATTCGTCATGATGTGACAGAGCAACTGTTGGTTGAGGTCGATCGGATCTACCATCTTGCATGCCCTGCTTCTCCGATTTTCTACAAATATAATCCTGTCAAGACAATAAAGACAAACGTAATTGGAACACTGAACATGCTTGGGCTTGCAAAGAGAGTTGGAGCAAGGATTTTGCTTACTTCTACTTCGGAAGTATATGGAGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTTAACCCTATTGGAGTTCGAAGTTGCTATGATGAGGGCAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATTCGCATTGCCAGAATCTTCAACACATATGGACCACGCATGAATATCGATGATGGGCGTGTTGTCAGCAACTTTATTGCTCAAGCAATTCGTGGTGAACCCCTAACAGTCCAACTTCCAGGAACACAAACTCGCAGTTTCTGCTATGCCTCCGACATGGTTGATGGCCTTATTCGTCTCATGGAAGGAGAAAACACTGGTCCGATCAACATTGGAAACCCAGGTGAGTTTACTATGACTGAACTTGCTGAGAATGTGAAAGAGCTTATTAATCCAGATGTGGAGATAAAGATGGTGGAGAATACTCCGGACGATCCTCGGCAAAGAAAACCAATCATAACAAAAGCAACTGAATTGCTTGGATGGGAACCTAAGGTCAAGTTGCGAGATGGTCTTCCTCTTATGGAAGAGGATTTCCGTCTAAGGCTCGGAGTTCCCAAGAAGAACTAA 1041 0.4284 MAANSSNGDQQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQLPGTQTRSFCYASDMVDGLIRLMEGENTGPINIGNPGEFTMTELAENVKELINPDVEIKMVENTPDDPRQRKPIITKATELLGWEPKVKLRDGLPLMEEDFRLRLGVPKKN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04404 346 CDD UGD_SDR_e 33 337 - -
Trre11g04404 346 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g04404 346 FunFam UDP-glucuronic acid decarboxylase 6 32 341 - -
Trre11g04404 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Trre11g04404 346 Gene3D - 32 339 - -
Trre11g04404 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 20 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Trre11g04404 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04404 Trre-Chr11 56399908 56403638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04404 30 345 Miscellaneous Gene Families AT1G02000 23.932 1.70e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04404 K08678 - qsu:112026144 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04404 11 56399908 56403638 Trre11g04404 11 56399908 56403638 ECH
Trre11g04404 11 56399908 56403638 Trre7g01502 7 11230173 11232634 PCT
Trre7g03313 7 32569851 32573488 Trre11g04404 11 56399908 56403638 PCT