Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03313 ATGGCAACTAATGGAGATCACCAAACAACACATAAGCAACCTCCCTTGCCATCTCCACTGCGTTTCTCCAAATTCTTTCAGTCGAACATGAGAATCCTAGTTACTGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGATAGATTGATGGAAAATGAAAAGAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCGAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAACTTATCCGTCATGATGTCACTGAGCCTTTGATGATTGAGGTGGATCAGATCTACCATCTCGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGACAATAAAGACAAATGTGATTGGCACTCTGAACATGCTTGGACTTGCAAAACGAGTTGGAGCAAGAATTTTGCTTACATCAACTTCGGAGGTATATGGGGATCCTCTTGAGCATCCTCAAACTGAGAACTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGCTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATTCGGGTTGCGAGAATCTTCAACACATATGGGCCGCGCATGAATATCGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGTGGTGAATCCTTGACGGTCCAATCTCCGGGAACGCAAACTCGCAGTTTCTGTTATGTCTCTGACCTGGTTGATGGTCTTATCCGTCTCATGGGAGGATCAGACACCGGTCCAATCAATCTTGGAAACCCAGGTGAATTCACAATGCTTGAACTTGCTGAGACGGTGAAGGAGCTTATTAATCCAGATGTGGAGATTAAGATAGTAGAGAACACTCCTGATGATCCAAGACAGAGAAAACCAGACATAACCAAAGCAACTGAATTGCTTGGCTGGGAACCAAAGGTCAAGCTGCGCGATGGTCTTCCTCTTATGGAAGGAGATTTCCGTTCGAGGCTTGGAATTGAGAAGAACATATAA 1032 0.439 MATNGDHQTTHKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLMIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTENYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAETVKELINPDVEIKIVENTPDDPRQRKPDITKATELLGWEPKVKLRDGLPLMEGDFRSRLGIEKNI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03313 343 CDD UGD_SDR_e 30 334 - -
Trre7g03313 343 Gene3D - 29 335 - -
Trre7g03313 343 FunFam UDP-glucuronic acid decarboxylase 6 29 338 - -
Trre7g03313 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 337 IPR036291 -
Trre7g03313 343 Pfam GDP-mannose 4,6 dehydratase 33 327 IPR016040 -
Trre7g03313 343 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 18 338 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03313 Trre-Chr7 32569851 32573488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03313 27 326 Miscellaneous Gene Families AT1G02000 23.881 1.85e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03313 K08678 - qsu:112026144 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03313 7 32569851 32573488 Trre11g04404 11 56399908 56403638 PCT