Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0960 ATGAAGAAACAATTGACAGGTTTAAGGGGTGATTCTCACTTGCACTCGGCTATTCGAGTTGGAAATTCGGAATCGGTGTTGGAAACAATCTCTGAGAATCAAGGTGAAGAAGAGTTAAAGGAGTTATTTTCTAAGCAAAATAATTCTGGTGAAACTGCTTTATATATAGCTGCTGAAAATGGTCATCTTGATATAGTTAAGGAATTGATCAAATATCATGATGTTGGATTGGCTAGCTTGAAAGCTAGAAATGGATTTGATGCATTTCATGTTGCTGCTAAAAATGGAAACTTGGAGATATTGAAGGTGCTCACGGAGGCATTTCCTGAAATTTCAATGACGGTTGATCTGACAAACACGACTGCACTGCACACTGCTGTGTCGCAAGGACATATTGAAATAGTAAATTTTCTATTAGAGAAAAGTAGTAGCGTCGTAACTATTGCGAAGAGCAACGGGAAAACTGCATTTCATTCTGCTGCAAGAAATGGACATGTGGAGGTCATCAAGGCCCTGCTTAACAGCGAACCTGAAATTGCAATGAGAATCGATAAGAAGGGGCAAACTGCCCTCCATATGGCTGTTAAAGGACAAAATCTGGAGGTAGTAGACGAGCTTTTGAAACTGAACCCATCTTTTGCTAATATGGTGGATGCCAAGGGAAACACTGCTCTGCATATAACAACTCGGAAGGGTCGTCTACAGATTGTTCAGAAGCTACTAGAATGCAAAGAAATAGACACTGATGTTATTAATAAATCTGGAGAAACAGCTTTGGATATTGCAGAGAGAACTGGTCGCTTGGACATTGCCAAATATTTGCAGGACCGTGGAGCTCAAAATGCTAGATCCATCAAATCGCCTTCAGCAAACAGAGCCCTTGAACTCAAACGAACTGTGAGTGACATAAAAAGTGGGGTGCATAACCAGCTGGAACACACATTTAAAACGCAAAGACGAATGAAAGGCATAGCAAAGCGAATTAACAAGATGCATGCTGAGGGGCTTAACAATGCAATCAACTCCAACACCGTTGTTGCTGTCCTCATTGCAACAGTTGCTTTTGCTGCCATATTTACTGTCCCGGGCCAGTATCCTGAGAACACTGAGAATCTCGCGCCTGGAATGTCTCCTGGGGAAGCCAATATTGCTCCAAATATTGAGTTCCTGATATTCGTAATATTTGATTCTACGGCCCTTTTCATATCATTAGCTGTTGTGATTGTCCAAACATCGGTGGTTGTTATTGAGAGGGAAGCAAAGAAACAAATGACGGCAATTATAAATAAGTTAATGTGGATAGCATGTGTGTTAATTTCTGTGGCATTCCTTGCAATGTCATACATAGTTGTTGGGGATCAGAAAGAATTGGCTATTGCAGCCACGGCTCTAGGAACGGTGATTATGGCGGCTACTCTAGGAACACTTTGTTATTGGGTGATTGCTCACCGACTCGAGGCCTCCAGATTACGAAGTCAAAGAACAATGACAAGCAGTAGGCATTCATTGGCTATGTCAGCTATGTCAGCTTCCGAGAATGAGTATAAAACAGTGTACGCAATATAA 1566 0.4144 MKKQLTGLRGDSHLHSAIRVGNSESVLETISENQGEEELKELFSKQNNSGETALYIAAENGHLDIVKELIKYHDVGLASLKARNGFDAFHVAAKNGNLEILKVLTEAFPEISMTVDLTNTTALHTAVSQGHIEIVNFLLEKSSSVVTIAKSNGKTAFHSAARNGHVEVIKALLNSEPEIAMRIDKKGQTALHMAVKGQNLEVVDELLKLNPSFANMVDAKGNTALHITTRKGRLQIVQKLLECKEIDTDVINKSGETALDIAERTGRLDIAKYLQDRGAQNARSIKSPSANRALELKRTVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAINSNTVVAVLIATVAFAAIFTVPGQYPENTENLAPGMSPGEANIAPNIEFLIFVIFDSTALFISLAVVIVQTSVVVIEREAKKQMTAIINKLMWIACVLISVAFLAMSYIVVGDQKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSQRTMTSSRHSLAMSAMSASENEYKTVYAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 254 284 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 9 41 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Tpr6g0960 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Tpr6g0960 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Tpr6g0960 521 Pfam Domain of unknown function 334 450 IPR026961 -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 174 - -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 254 280 - -
Tpr6g0960 521 Gene3D - 1 145 IPR036770 -
Tpr6g0960 521 Gene3D - 146 212 IPR036770 -
Tpr6g0960 521 Gene3D - 213 297 IPR036770 -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Tpr6g0960 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 254 280 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat profile. 49 71 IPR002110 GO:0005515
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Tpr6g0960 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Tpr6g0960 521 ProSiteProfiles Ankyrin repeat region circular profile. 49 71 - -
Tpr6g0960 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Tpr6g0960 521 Pfam Ankyrin repeats (3 copies) 218 280 IPR002110 GO:0005515
Tpr6g0960 521 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Tpr6g0960 521 Pfam Ankyrin repeats (3 copies) 81 144 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0960 Tpr-Chr6 8432115 8435706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0960 1 521 Miscellaneous Gene Families AT1G07710 63.188 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0960 - - gmx:100787392 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0960 6 8432115 8435706 Tpr6g0960 6 8432115 8435706 ECH
Tpr6g0960 6 8432115 8435706 Tpr7g4645 7 54847728 54853818 ECH
Tpr6g0960 6 8432115 8435706 Tpr4g1780 4 18478995 18482932 ECH