Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1780 ATGAATCCAATGGACACAGAAGCAGAAACTATGCAGCCTCAGGCTGCACCACCAGTAAGAGCTCAAAGGAAGAAAATGACGAAACAATTGACAGGGAAGCGCGATGATACGCCTTTACATTCTGCGGCAAGAGCAGGAAATATGGCTTCTTTGAAGGATACAGTTGATGGTGCTGAAGAGAGTAAACTGCGTGAAATATTTAATAAGCAGAATCAAGGTGGAGAAACAGCACTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAGAGAGATGATTCAGTATTATGATCTTGTTGATGCTGGAATTAAAGCGAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGAGATTTAGATATAGTAAAGATCCTAATGGAAGCACATCCTGAATTATCAATGACTGTGGATCCATCCAACACCACAGCCTTACACACAGCTGCAACACAAGGCCACACTGAGATAGTGAAATTTCTATTAGAAGCAGGTAGTAGCTTAGCAACCATTGCTAGAAGTAATGGTAAAACAGCTTTGCATTCTGCTGCAAGAAATGGACATTTGGAGGTTTTGAAAGCGGTTCTAGAGAAGGAACCTGGTGTTGTAACAAGGACCGATAAAAAGGGACAGACGGCACTTCACATGGCAGTGAAGGGACAGAATCTTGTGGTGGTAGAGGAGTTGATAAAAGCAGATCCGTCAACAATAAACTTGGTTGATAATAAGGGTAATACAGCATTGCATATAGCAACCAGGAAGGGCAGAACTCAGATCATCAAGTTGATACTTGGACAGAGTGAAACAAATGGCATGGCAGTAAACAAAAGTGGCGAAACAGCATTAGACACAGCTGAAAAAACAGGAAATTCTGAAGTAAAAAGCATTCTAGCAGAACATGGTATTCAAAGTGGCAAATCAATAAAATCTCAACCAAAAACAGCTGCAACTAGAGAATTAAAACAAACAGTCAGCGACATAAAGCATGAAGTCCATCACCAACTAGAACACACACGCCAAACGCGAAAAAGTGTTCAAGGAATCGCAAAACGTCTAAACAAAATGCACACAGAAGGACTCAACAACGCAATAAACTCAACAACCGTCGTCGCAGTCCTCATAGCAACAGTCGCATTCGCAGCTATCTTCACCGTCCCAGGCCAATTCGCGGACGATCCAAAAAAAATTCCTAAAGGAAAATCCCTCGGCGAAGCAAACATAGCTCCAAATCCCGCGTTTATAATCTTCTTCATCTTCGACTCATTCGCACTTTTCATTTCCCTAGCGGTTGTGGTGGTTCAAACTTCAATAGTTGTTATAGAAAGCAAAGCAAAGAAGCAAATGATGGCTATAATTAACAAACTAATGTGGTTAGCTTGTGTGCTTATTTCCGTTTCGTTTTTGGCTTTGTCTTTCATCGTTGTTGGGAAAGATCAAAGGTGGCTTGCAATTGGAGTAACTGTAATTGGAACAACTATAATGGCTACTACATTAGGTACTATGTGTTATTGGGTTATTCAGCATCGAATCGAAGCTTCGAGTATAAGGAGATCTTCAATGGGTAGCAGGTCAAGGTCTTTTTCAGTTTCAGTTGTTATGTCAGATTCTGAGATATTAAATAATGAGCGTACTAAAATGTATGCTATATAG 1653 0.4035 MNPMDTEAETMQPQAAPPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEESKLREIFNKQNQGGETALYVAAEYGYVDMVREMIQYYDLVDAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVLKAVLEKEPGVVTRTDKKGQTALHMAVKGQNLVVVEELIKADPSTINLVDNKGNTALHIATRKGRTQIIKLILGQSETNGMAVNKSGETALDTAEKTGNSEVKSILAEHGIQSGKSIKSQPKTAATRELKQTVSDIKHEVHHQLEHTRQTRKSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKKIPKGKSLGEANIAPNPAFIIFFIFDSFALFISLAVVVVQTSIVVIESKAKKQMMAIINKLMWLACVLISVSFLALSFIVVGKDQRWLAIGVTVIGTTIMATTLGTMCYWVIQHRIEASSIRRSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1780 550 Pfam Ankyrin repeat 245 266 IPR002110 GO:0005515
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Tpr4g1780 550 SUPERFAMILY Ankyrin repeat 38 303 IPR036770 -
Tpr4g1780 550 Pfam Domain of unknown function 359 475 IPR026961 -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat profile. 142 174 IPR002110 GO:0005515
Tpr4g1780 550 MobiDBLite consensus disorder prediction 1 48 - -
Tpr4g1780 550 SMART ANK_2a 210 240 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 108 137 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 176 206 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 34 63 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 73 102 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 142 171 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 244 277 IPR002110 GO:0005515
Tpr4g1780 550 SMART ANK_2a 278 311 IPR002110 GO:0005515
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Tpr4g1780 550 Pfam Ankyrin repeats (3 copies) 176 235 IPR002110 GO:0005515
Tpr4g1780 550 Pfam Ankyrin repeats (3 copies) 26 96 IPR002110 GO:0005515
Tpr4g1780 550 Pfam Ankyrin repeats (3 copies) 103 169 IPR002110 GO:0005515
Tpr4g1780 550 Gene3D - 7 172 IPR036770 -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat profile. 244 265 IPR002110 GO:0005515
Tpr4g1780 550 Gene3D - 173 361 IPR036770 -
Tpr4g1780 550 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 15 550 - -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat region circular profile. 244 265 - -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat region circular profile. 108 130 - -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat region circular profile. 142 169 - -
Tpr4g1780 550 PANTHER ANKYRIN REPEAT PLANT PROTEIN 15 550 - -
Tpr4g1780 550 ProSiteProfiles Ankyrin repeat region circular profile. 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1780 Tpr-Chr4 18478995 18482932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1780 4 550 Miscellaneous Gene Families AT1G07710 70.780 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1780 - - gmx:100809687 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1780 4 18478995 18482932 Tpr4g1780 4 18478995 18482932 ECH
Tpr7g4645 7 54847728 54853818 Tpr4g1780 4 18478995 18482932 ECH
Tpr6g0960 6 8432115 8435706 Tpr4g1780 4 18478995 18482932 ECH