Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4282 ATGTCTCTGTTCTCACATCACCAACATTCTTCACATCAATTCTTCATTTTCCTACTTATCTTAGCTTTCAAAGGGTTTACAATTTCAGTTTCAGCAACAACATTCACATTTGTGAACAAATGTGATCATACAGTATGGCCAGGAATTCTAGGTAAACCGGATCTCGGAACAACCGGTTTCGAACTCAAAAAGGGAACAACACAAACCTTTCAAGCACCAACCGGTTGGTCCGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGATGATTCCGGTCACGGAACATGCTCAACCGGCGACTGTGGTTCCGGAGAAATCAACTGCAACGGTAACGGAGCAACACCACCAGCAACACTAGCAGAATTCACTCTAGGAACAGGCTCACCTGATTACTACGACGTTAGTCTCGTCGATGGTTACAATCTTCCGATGATCGTTGAAACCAACGGCGGTTCAGGTTCATGTGAGGCTACTGGTTGTGGTGAAGATATTAACCGGAGGTGTCCATCGGAGTTGAGAGTGGATGGTGGTGACGCGTGTAATAGCGCGTGTGGCGCGTTTGGGAGAGAGGAGTATTGTTGCAGCGGCGCGTTTGCTTCGCCGTCGAGTTGTTCTCCGTCGGTTTATTCGGAAATGTTTAAAGTTGCTTGTCCGAAATCTTATAGCTATGCGTTTGATGATGCTACGAGTACTTTTACTTGTACTGATGCTGCTGATTATACTATCACATTTTGTCCTTCTTCTTCCCCAAGTTTGAAGTCTTTGATGCAGTCAGGACCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAGTCATGGATAGCCAATTTGGCTACGGGGGATTCCACAAGAATAAACCAACCATTTTCAATTTCCATGTCTATATTTTTTATGGCTATCACTTTCATTTTTTCATATTTAGTCTTTTAG 933 0.4405 MSLFSHHQHSSHQFFIFLLILAFKGFTISVSATTFTFVNKCDHTVWPGILGKPDLGTTGFELKKGTTQTFQAPTGWSGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGTGSPDYYDVSLVDGYNLPMIVETNGGSGSCEATGCGEDINRRCPSELRVDGGDACNSACGAFGREEYCCSGAFASPSSCSPSVYSEMFKVACPKSYSYAFDDATSTFTCTDAADYTITFCPSSSPSLKSLMQSGPGSSVEQAAVATKSWIANLATGDSTRINQPFSISMSIFFMAITFIFSYLVF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4282 310 ProSitePatterns Thaumatin family signature. 92 108 IPR017949 -
Tpr4g4282 310 ProSiteProfiles Thaumatin family profile. 32 246 IPR001938 -
Tpr4g4282 310 Pfam Thaumatin family 39 246 IPR001938 -
Tpr4g4282 310 CDD TLP-PA 34 245 - -
Tpr4g4282 310 Gene3D Thaumatin 33 246 IPR037176 -
Tpr4g4282 310 PANTHER OS03G0233200 PROTEIN 7 270 IPR001938 -
Tpr4g4282 310 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
Tpr4g4282 310 PIRSF PR5 1 294 IPR001938 -
Tpr4g4282 310 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 7 270 - -
Tpr4g4282 310 SMART tha2 35 246 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 58 67 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 79 90 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 92 121 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Tpr4g4282 310 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4282 Tpr-Chr4 49974684 49977319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4282 15 286 Receptor kinase-like Gene Family AT5G38280 42.606 4.37e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4282 - - gmx:100808342 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4282 4 49974684 49977319 Tpr4g4282 4 49974684 49977319 ECH
Tpr2g1113 2 13093209 13095404 Tpr4g4282 4 49974684 49977319 ECH
Tpr2g1112 2 13074975 13077057 Tpr4g4282 4 49974684 49977319 PCT