Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4258 ATGGCCATTAGAAAATCCAACAAGTTACCACAACCAGATGTTATAATCAAGCAAATTCTTAAAAGATGTTCAAGTTTTGGAAAAAAACAGGGGTACAATGAACATGATCTTCCTGAAGATGTACCTAAAGGTCATTTTGTTGTTTATGTTGGAGAGAATAGAACAAGATATATTGTTCCAATTTCATGGTTGCCTCATCCACAGTTTCAAAGTTTGCTTCAAAGAGCTGAGGAAGAATTTGGATTTAATCATGACATGGGCCTTACTATCCCTTGTGATGAAGTTGTTTTTGAGTTTCTTACTTCATTGATCAGATAA 318 0.3428 MAIRKSNKLPQPDVIIKQILKRCSSFGKKQGYNEHDLPEDVPKGHFVVYVGENRTRYIVPISWLPHPQFQSLLQRAEEEFGFNHDMGLTIPCDEVVFEFLTSLIR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4258 105 Pfam Auxin responsive protein 28 103 IPR003676 GO:0009733
Tpr4g4258 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Tpr4g4258 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4258 Tpr-Chr4 49745997 49746787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4258 5 104 Calmodulin-binding Proteins AT4G34750 45.098 4.18e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4258 K14488 - gmx:100500218 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1090 2 12792603 12793316 Tpr4g4258 4 49745997 49746787 ECH
Tpr7g0248 7 2022243 2023083 Tpr4g4258 4 49745997 49746787 ECH
Tpr4g4258 4 49745997 49746787 Tpr4g4258 4 49745997 49746787 ECH
Tpr3g2425 3 23076252 23076819 Tpr4g4258 4 49745997 49746787 ECH