Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4214 ATGTCAGTGGCTGGACCCGAATCTCCCAGGCCAGCTCTTGAAAAGATTGACCGCGTTGAATCTTTTAAGAAGAAGCTAAGAAATTCCTTCACTAGGAGGAATAGGCGAAGCAGTAGCAAGGTTATGTCGGGTGAAATTGAAGATATCCGCAATGCTGATGATTTGAAAGCCGTTGATGAATTCCGTCAGGCTCTCGTGTTGGAGGAATTGCTCCCTGAGAAGCATGATGACTATCATATGCTGCTCAGATTCCTTAGGGCAAGGAAATTTGACATTGAGAAATCAAAGCAAATGTGGTCTGACATGCTTAAGTGGAGGAAGGAATTTGGTGCTGACACTATTATTGAGGACTTTGAATTCAAGGAACTTGAGGAAGTAATGCAATATTATCCTCATGGACATCATGGAGTTGATAAGGAAGGAAGACCAATTTACATTGAGAGGCTGGGACAAGTTGATGCCACCAAGTTGATGCAAGTCACGACCATGGATCGTTACATCAAATACCATGTCAAGGAGTTCGAGAGGACTTTTGATCTCAAATTTGCAGCTTGTTCCATTGCTGCAAAGAAGCACATTGATCAAAGTACCACCATTTTGGATGTCCAAGGAGTGGGTCTTAAGAACTTCAACAAACAAGCAAGGGACCTTATCACGAGCCTTCAGAAGATTGACGGTGACAATTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACTGTTAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCAAGTGAATTGCCAGAGTTTTTAGGAGGTACTTGTACCTGCGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATCAAGAAATTTATAGGATGGTTCAGAATGGCGAACACAAATGCTCAACGAAATGTGAGGTTCCAATCGTGGTAGAAACACCTAGGGTAAGCGAGGCTGCCAAAATCGAGGCAGTTTTCACTGCACAATTGTCAGTTGCACAAAGGAATCCTGTCCTTGCCAAGGTCCCTTCTGCAAAACCTAGCAACTACGAGGAATTTGTTGTCCCTGCAAAACCTACCAACTACGACGAATTTGTTGTCCCTGTGGCTGATAAAACTGTTTGGAAGAAGGTGGAACCAAATGAGACATATGCAGTATCAAAAGCTGTAGTGGAAGCTTTCACGATGCCTGATTCGTGTAAGATTCACGAAAAGGTGAACTCACAGATTTTCACCGGTGTGATGGCCTTTGTGATGGGAATTGTAACAATGGTGAGGATGACAAGAAACATGCCGAAGGTGCTCACTGATGCCAACTTCTACTCAAATTCTGCTTACGCTGGTGAGGACTATAAAGCCGAAGTCCCTTCTGAACAAATGACTAGCCCTACCATTTCTGCTCAAGAGTTTATGACTGTGATGAAACGCATGGCTGAGTTGGAAGCTAAAATGGGTAACATGAACGCACCAACTACTTGCATGCCACCTGAGAAGGAGGAAATGCTTAATGCTGCGATAACTCGCGCTGATGCTCTTGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCAAGCAAGACGAGCTTTCGGCTTACATCGAGAAAAAGAAAAATAAGAAGAAGAAGTCGTTGTTTGCATGGCCAGCATGA 1731 0.4367 MSVAGPESPRPALEKIDRVESFKKKLRNSFTRRNRRSSSKVMSGEIEDIRNADDLKAVDEFRQALVLEELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSDMLKWRKEFGADTIIEDFEFKELEEVMQYYPHGHHGVDKEGRPIYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARDLITSLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDQEIYRMVQNGEHKCSTKCEVPIVVETPRVSEAAKIEAVFTAQLSVAQRNPVLAKVPSAKPSNYEEFVVPAKPTNYDEFVVPVADKTVWKKVEPNETYAVSKAVVEAFTMPDSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKVLTDANFYSNSAYAGEDYKAEVPSEQMTSPTISAQEFMTVMKRMAELEAKMGNMNAPTTCMPPEKEEMLNAAITRADALEQELMATKKALEDSLAKQDELSAYIEKKKNKKKKSLFAWPA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4214 576 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 4 569 - -
Tpr4g4214 576 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 4 569 - -
Tpr4g4214 576 CDD SEC14 123 291 IPR001251 -
Tpr4g4214 576 SMART sec14_4 122 293 IPR001251 -
Tpr4g4214 576 Gene3D - 17 109 - -
Tpr4g4214 576 PRINTS Cellular retinaldehyde-binding protein signature 80 102 - -
Tpr4g4214 576 PRINTS Cellular retinaldehyde-binding protein signature 249 268 - -
Tpr4g4214 576 PRINTS Cellular retinaldehyde-binding protein signature 282 291 - -
Tpr4g4214 576 Gene3D - 110 321 IPR036865 -
Tpr4g4214 576 SMART CRAL_TRIO_N_2 77 102 IPR011074 -
Tpr4g4214 576 Coils Coil 525 552 - -
Tpr4g4214 576 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 122 296 IPR001251 -
Tpr4g4214 576 Pfam CRAL/TRIO, N-terminal domain 59 101 IPR011074 -
Tpr4g4214 576 SUPERFAMILY CRAL/TRIO domain 122 318 IPR036865 -
Tpr4g4214 576 SUPERFAMILY CRAL/TRIO N-terminal domain 52 118 IPR036273 -
Tpr4g4214 576 Pfam CRAL/TRIO domain 128 290 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4214 Tpr-Chr4 49247985 49252724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4214 56 287 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 3.13e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4214 - - gmx:100785716 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1035 2 12204074 12209257 Tpr4g4214 4 49247985 49252724 ECH
Tpr4g4214 4 49247985 49252724 Tpr4g4214 4 49247985 49252724 ECH
Tpr3g2342 3 22220868 22224793 Tpr4g4214 4 49247985 49252724 ECH