Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1035 ATGTCAGGAGGACCTCCTTCAGCTTCTGGGAATGGTTCTTTTAAACAAAAACTCAGGAGTTCTTTGTCAAGAAAAGGTAGGCGTAGTAGTAAGGTCATGTCTGTTGAAATCGAGGATGTTCACGATGCTGAGGAGTTGAAAGCCGTTGAAGAGTTTCGTCAAGTTCTTGTAGCGGAAGACCTCCTCCCTGCAAAACATGATGACTATCATATGATGCTTAGATTCCTAAAGGCTAGGAAATTTGAGATTGATAAATCAAAGCTGATGTGGTCTGATATGTTGAAATGGAGGAAAGAATTTGGTGCTGACACTATTGGGGAGGAATTTGAATTCAATGAAATTGATGAAGTAATGCAATATTATCCACATGGACATCATGGAGTAGACAAAGATGGACGACCTGTGTACATAGAAAGATTAGGACTAGTCGATGCGACTAAGATGATGCAAGTCACAACCATGGATCGCTATATAAAATACCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCTGCTTGTTCAATTGCTGCCAAGAAGCACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAGCAAACATGCTAGGGAACTTGTTACTCGCATTCAAAAGGTCGACGGAGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATATTGTGGAACACTGTAAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCAATGTTCTTGGCAACAAGTATGATACTAAGTTGCTTGAAATAATTGATGCAAGTGAGTTACCCGAGTTTTTAGGAGGTACATGTAAATGTGCTGATGAAGGAGGATGTATGCGTTCGGATAAGGGACCATGGAAAGATGCCGAAATAATGAAGTTGGTTCAGATTGGTGCTCACAAATGTTCAAAAAAATCTGCGTCTCAGATTGAGGAAGAAGAGAAAACAAATTCTGAGGACCCAAAGACTCCAAAGACTCCCAAGACTCCAAAGACTCCAAAGACTCCCAAGACTCCCAAGTTGGAGGCAAATGTCACCGCAGAAGCTTCTCCAGTTTGCGAAGAGGTCCCTGCTGCTAAAGCTTCTAAGCAAGAGGATGTAACCCCGGCGGTGGTTGATAAAAAACCTTCTCATAAAAAAGTTGAGGATAAAAAAGTTGAGGAGAGTGACCCAATGGCAACATCAAAAGAGTTTGTGACTGTCATGAAACGCATGGCTGAGTTGGAAGATAAAATGTCAAACATTAATCATCAGCCTGCATTAATGCCACCTGAGAAGGAGGAAATGCTAAATAATACTATCAGTCGAGCTGATTTATTGGAAAAAGAACTCCAGGCCACGAAGAAGGCTTTAGAGGATTCACTGGCTAAACAAGAGGAGATTTCGGCTTATGTTGAGAATAAAAAGCAGAATAAAAGAACGTGTTTTTGTCTATGGTAA 1479 0.4104 MSGGPPSASGNGSFKQKLRSSLSRKGRRSSKVMSVEIEDVHDAEELKAVEEFRQVLVAEDLLPAKHDDYHMMLRFLKARKFEIDKSKLMWSDMLKWRKEFGADTIGEEFEFNEIDEVMQYYPHGHHGVDKDGRPVYIERLGLVDATKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFSKHARELVTRIQKVDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPEFLGGTCKCADEGGCMRSDKGPWKDAEIMKLVQIGAHKCSKKSASQIEEEEKTNSEDPKTPKTPKTPKTPKTPKTPKLEANVTAEASPVCEEVPAAKASKQEDVTPAVVDKKPSHKKVEDKKVEESDPMATSKEFVTVMKRMAELEDKMSNINHQPALMPPEKEEMLNNTISRADLLEKELQATKKALEDSLAKQEEISAYVENKKQNKRTCFCLW* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1035 492 SUPERFAMILY CRAL/TRIO N-terminal domain 42 108 IPR036273 -
Tpr2g1035 492 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 373 487 - -
Tpr2g1035 492 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 15 390 - -
Tpr2g1035 492 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 113 287 IPR001251 -
Tpr2g1035 492 CDD SEC14 114 282 IPR001251 -
Tpr2g1035 492 PRINTS Cellular retinaldehyde-binding protein signature 71 93 - -
Tpr2g1035 492 PRINTS Cellular retinaldehyde-binding protein signature 240 259 - -
Tpr2g1035 492 PRINTS Cellular retinaldehyde-binding protein signature 273 282 - -
Tpr2g1035 492 SMART sec14_4 113 284 IPR001251 -
Tpr2g1035 492 SMART CRAL_TRIO_N_2 68 93 IPR011074 -
Tpr2g1035 492 MobiDBLite consensus disorder prediction 380 405 - -
Tpr2g1035 492 Coils Coil 443 474 - -
Tpr2g1035 492 SUPERFAMILY CRAL/TRIO domain 113 309 IPR036865 -
Tpr2g1035 492 MobiDBLite consensus disorder prediction 1 19 - -
Tpr2g1035 492 Gene3D - 25 100 - -
Tpr2g1035 492 Pfam CRAL/TRIO domain 119 281 IPR001251 -
Tpr2g1035 492 MobiDBLite consensus disorder prediction 318 340 - -
Tpr2g1035 492 Gene3D - 101 312 IPR036865 -
Tpr2g1035 492 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 390 - -
Tpr2g1035 492 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 373 487 - -
Tpr2g1035 492 MobiDBLite consensus disorder prediction 317 405 - -
Tpr2g1035 492 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1035 Tpr-Chr2 12204074 12209257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1035 47 278 Acyl Lipid Metabolism Gene Families AT5G47730 27.668 3.82e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1035 - - gmx:100527533 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1035 2 12204074 12209257 Tpr4g4214 4 49247985 49252724 ECH
Tpr2g1035 2 12204074 12209257 Tpr2g1035 2 12204074 12209257 ECH
Tpr3g2342 3 22220868 22224793 Tpr2g1035 2 12204074 12209257 ECH