Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2342 ATGTGTGACACTATCTCTGCACCTATTAGTATTGATCAACCTGTTAAAGGTCTTGAGACTGAAAATTTGGAGGATGAAAAGAAGACAAAGCTTGGATCCTTAAAGAAGGTAGCAATAAATGCATCTTCTATGTTCAAAAATTCCATAAAGAAGGGGCGAAGACACGGCAGGGTTATGTCTATTGTCGAGGATGAACTCGATACAGAAGAGTTGCTGGCACTTGAAGCTTTTCGCCAAGTACTTACTCTAGAAGAGCTATTACCCTCAAAACACAATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTATGACATCGAGAAAACAAAGCAAATGTGGGAAGATATGCTCCAATGGAGGAAGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAATGAGATAGATGAAGTTCTAAAGTACTACCCTCAAGGAACACATGGAGTTGATAAGGATGGAAGACCAGTTTATATCGAAAGGTTGGGTTTGGTTGACTCAAACAAGCTGATGCAAGTAACAACTATCGACCGATATCTTAAGTACCACGTAAGAGAGTTCGAGAAGACATTCAATGTTAAGATGCCTGCTTGTTCGATTGCTGCAAAGAAACACATTGATCAAAGCACAACAATCTTGGATGTGCAAGGATTGGGTCTCAGAAGTATGAACAAAGCTGCAAGAGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCTTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGATGTTGTGGAACACTGTTAAGTCCTTCCTTGATCCTAAAACCACCTCCAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATCGATGCCAGTGAACTTCCAGAGTTCTTGGGGGGTACTTGTACTTGTGCAGACAAAGGCGGTTGCATGCTTTCTGACAAGGGACCATGGAATGACCCCGAAATCTTGAAGATGCTTCAAAACGGTGAAGTAAAATGCAGAAGGAAAACTTCATCCGAGGTTGCGGAGAAAACAAACATCAAAGATGAAACAAAGTGTCAAAAGGAATGTGATTCTTTCAACAAAGAAGCTGCTCTCGAGGAGGCATGCCACGCTATAGCAGAAGCAGCAAAACAATGTAATAATGTATATCAGTTTGAAACCTTGGCCAAAGACAAACCAGTTTCCTGGAATGAAGCAATACAAAATGATCAAAAGAAACTTTCTAAAGGTTGCTACGATAACAATGTTTGCAGGACTTCTAATGGATTTAGAAACCAATTTGTCGGTGGACTCATGTCTGTTATTTTGGCAATCATAACGTTAATCCGCGTGACTCGGTACATGCCAAGGAAAAGGACTGCAGATATGTATGGTAACTCAGTATGTTATGATGACAATATGATGAAAAAAGCACCTGGAATTTCCTTTGATGATCACATGACTATGATGAAGCGCATGGCCGATCTTGAAGAGAAGGTGAACACCCTCGTGATGAGACCTTCCATACCACCTGAAGTGGAAGAATTGCTCAACAGTGCTCTAAACCGTGTCGAAATGCTCGAGCAAGAGTTAGCTACATCTAAAAAGGCACTTGACGACGCCCTTGTGAAGCAAGTGGAGCTTCAATCACAAATTGACAAAAAGAAAAAGAAGAAGTTGTTCCACTGGTAA 1695 0.4094 MCDTISAPISIDQPVKGLETENLEDEKKTKLGSLKKVAINASSMFKNSIKKGRRHGRVMSIVEDELDTEELLALEAFRQVLTLEELLPSKHNDHHMMLRFLRARKYDIEKTKQMWEDMLQWRKEFGADTIMEDFEFNEIDEVLKYYPQGTHGVDKDGRPVYIERLGLVDSNKLMQVTTIDRYLKYHVREFEKTFNVKMPACSIAAKKHIDQSTTILDVQGLGLRSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMLQNGEVKCRRKTSSEVAEKTNIKDETKCQKECDSFNKEAALEEACHAIAEAAKQCNNVYQFETLAKDKPVSWNEAIQNDQKKLSKGCYDNNVCRTSNGFRNQFVGGLMSVILAIITLIRVTRYMPRKRTADMYGNSVCYDDNMMKKAPGISFDDHMTMMKRMADLEEKVNTLVMRPSIPPEVEELLNSALNRVEMLEQELATSKKALDDALVKQVELQSQIDKKKKKKLFHW* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2342 564 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 8 561 - -
Tpr3g2342 564 Pfam CRAL/TRIO domain 144 306 IPR001251 -
Tpr3g2342 564 SUPERFAMILY CRAL/TRIO domain 138 334 IPR036865 -
Tpr3g2342 564 Gene3D - 126 338 IPR036865 -
Tpr3g2342 564 CDD SEC14 139 307 IPR001251 -
Tpr3g2342 564 Coils Coil 518 559 - -
Tpr3g2342 564 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 8 561 - -
Tpr3g2342 564 Pfam CRAL/TRIO, N-terminal domain 81 117 IPR011074 -
Tpr3g2342 564 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 138 312 IPR001251 -
Tpr3g2342 564 Gene3D - 55 125 - -
Tpr3g2342 564 SMART sec14_4 138 309 IPR001251 -
Tpr3g2342 564 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Tpr3g2342 564 SUPERFAMILY CRAL/TRIO N-terminal domain 64 134 IPR036273 -
Tpr3g2342 564 PRINTS Cellular retinaldehyde-binding protein signature 96 118 - -
Tpr3g2342 564 PRINTS Cellular retinaldehyde-binding protein signature 265 284 - -
Tpr3g2342 564 PRINTS Cellular retinaldehyde-binding protein signature 298 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2342 Tpr-Chr3 22220868 22224793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2342 59 303 Acyl Lipid Metabolism Gene Families AT5G47730 27.953 5.64e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2342 - - gmx:100792335 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2342 3 22220868 22224793 Tpr3g2342 3 22220868 22224793 ECH
Tpr3g2342 3 22220868 22224793 Tpr2g1035 2 12204074 12209257 ECH
Tpr3g2342 3 22220868 22224793 Tpr4g4214 4 49247985 49252724 ECH