Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4179 ATGTTATGTATGGATTTTATTGAAAAAGTTTACATGGCAATTGTGATTTGTTTTGTGAAGTTGTGTGGTAGAAAACCAGAGAAACGTTATAAATGGGAGACTATTAAGGATGATGATGTTGAATTGGGTAACTCTAATTATCCAATGGTTCTTGTCCAAATTCCAATGTACAATGAAAGAGAGGTTTATCGGCTATCAATTGGTGCTGCATGTGGACTCTCTTGGCCTTCTGATAGAATCATCATACAAATTCTTGATGATTCAACTGAGTCAGCAATCATGGAGTTGGTGGAGATGGAATGCCGTATATGGGAAAGCAAAGGTGTTAACATAAAGTATGAAGTTAGGGACAACAGAAATGGGTACAAAGCAGGAGCTCTAAAAGAGGGGATGAAGCATAGCTATGTCACACAATGTGATTATGTTGCCATCTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTCTATCAAACCATCCCTTTCCTTGTCAATAATCCTGAAATTGGTCTTGTTCAAGCTCGTTGGACATTTGTGAATGCGGATGAATGTATGATGACTAGGATGCAACAAATGTCACTTAATTACCATTTTAAAGTGGAACAAGAAGTGGGATCTTCCACTTACGCCTTCTTTGACTTCAACGGAACTGCGGGTGTGTGGAGAATTTCGGCGTTGAATGAAGCTGGTGGGTGGAAAGATAGGACCACGGTTGAAGATATGGATTTATCCGTACGTGCTAGTCTCAAAGGATGGAAATTTGTATTCCTCTCTAAAACACAGGTTAAAAGTGAATTACCGAGTACTTTAAAGGCCTATAGATACCAACAACACAGATGGTCATGTGGGCCAGCCAATCTTTTCAGGAAAGTGGTGATGGAAATTTTCACAAACCAGAAAGTGTCTTTGTGGACGAAGTTACATATTGTTTACAGTTTTTTCTTTGTTCGAAAGATTGTGGTCCACATAAATACATTTGTGTTCTATTGTATTGTGTTACCTGCAACTGTTATGGTGCCTGAGGTTGTAGTCCCTAAATGGAGTTGTGTTTATATCCCATGCATCATGACACTTCTCAAAGCTGTTGGAACTCCAAGGTCATTACCTTTACTTGTATTTTGGGTTCTCTTTGAAAATACCATGTCTCTACATCGAACAAAGGCAACAATTATAGGTCTATTAGAGACAAGTAGGGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCACTTCTTAAGGATAAAATTGGTGGTACTAAAGTATTCAAAAAGATTGACATGACAGAACTTATAGTTGGATTCTACCTCCTATTTTGTGGATGCTATGATTTTATGTATGGGAAAAGCTACTTCTTCATATTCCTATACTTGCAAGCGATTACTTTCTTCATCCTGGCATTTGGATATGTTGGCACTTTTGTTCCCAAATCCTAG 1437 0.3807 MLCMDFIEKVYMAIVICFVKLCGRKPEKRYKWETIKDDDVELGNSNYPMVLVQIPMYNEREVYRLSIGAACGLSWPSDRIIIQILDDSTESAIMELVEMECRIWESKGVNIKYEVRDNRNGYKAGALKEGMKHSYVTQCDYVAIFDADFQPEPDFLYQTIPFLVNNPEIGLVQARWTFVNADECMMTRMQQMSLNYHFKVEQEVGSSTYAFFDFNGTAGVWRISALNEAGGWKDRTTVEDMDLSVRASLKGWKFVFLSKTQVKSELPSTLKAYRYQQHRWSCGPANLFRKVVMEIFTNQKVSLWTKLHIVYSFFFVRKIVVHINTFVFYCIVLPATVMVPEVVVPKWSCVYIPCIMTLLKAVGTPRSLPLLVFWVLFENTMSLHRTKATIIGLLETSRVNEWIVTEKLGDALLKDKIGGTKVFKKIDMTELIVGFYLLFCGCYDFMYGKSYFFIFLYLQAITFFILAFGYVGTFVPKS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4179 478 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 39 267 IPR029044 -
Tpr1g4179 478 CDD CESA_CaSu_A2 48 284 - -
Tpr1g4179 478 PANTHER - 4 477 - -
Tpr1g4179 478 SUPERFAMILY Nucleotide-diphospho-sugar transferases 45 326 IPR029044 -
Tpr1g4179 478 Pfam Glycosyl transferase family group 2 141 354 IPR001173 -
Tpr1g4179 478 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 4 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4179 Tpr-Chr1 48332360 48341011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4179 1 477 Miscellaneous Gene Families AT5G03760 71.843 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4179 K13680 - gmx:100782772 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0786 6 6668731 6675798 Tpr1g4179 1 48332360 48341011 ECH
Tpr1g4222 1 49009806 49013659 Tpr1g4179 1 48332360 48341011 ECH
Tpr1g4179 1 48332360 48341011 Tpr1g4179 1 48332360 48341011 ECH