Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4222 ATGGAGGCATTTCAAGTAGTAATTGGAGGAGTTGGTATGCAAATTGAGTTTGTTTGGAAGCATATGAGAGAAGCTTTGGTTGTACCAATACTGAAAATTGCAGTGTTTTTGTGCATATGCATGTTATTGATGGATTTTGTTGAAAAAGTTTATATGGCAATTGTGATTAGTTTTGTGAAGTTGTGTGGTAGAAAACCAGAGAAACGTTATAAATGGGAGACTATTAAGGATGATGATGTTGAATTGGGTAACTCTAATTATCCAATGGTTCTTGTCCAAATTCCAATGTACAATGAAAGAGAGGTTTATAAGCTATCCATTGGTGCTGCATGTGGACTCTCTTGGCCTTCTGATAGAATCATCATACAAATTCTTGATGACTCAACTGACCAAGCAATTCAGGAGTTGGTGCAGGTGGAATGCCATATATGGGAAAGCAAAGGTATTAATATAAAGTATGAAGTTAGGGACAACAGAAATGGGTACAAAGCAGGAGCTTTAAAAGAGGGAATGAAGCATAGCTATGTCATGCAATGTGATTATGTTGTTATCTTTGACGCTGATTTTCAACCTGAACCTGATTTTCTCTGTCAAACCATCCCTTTTCTTATCAATAATCCTGAAATTGGTCTCGTTCAGGGTCGCTGGAAATTTGTGAATGCGAATGAATGTTTGATGACGAGGATGCAACAAATGTCACTTGATTACCATTTTAAGGTGGAACAAGAAGTTGGATCTTCCACTTATGCCTTCTTTGGCTTCAATGGGACTGCGGGTGTGTGGAGAATTTCAGCGTTGAATGAAGCTGGTGGGTGGAAAGATAGGACTACAGTTGAAGATATGGATTTGGCCGTACGTGCTAGTCTCAAAGGATGGAAATTCTTATATCTTGCTAATCTACAGGTTAAAAGCGAATTGCCAAGTACTTTAAAGGCTTATAGGTACCAACAACACAGATGGTCATGCGGGCCAGCCAATCTTTTCAGGAAAGTGGTTATGGAGATTTTCACAAACAAGAAAGTGTCTTTGTGGACAAAGTTACATATTGTTTACAGTTTTTTCTTTGTTCGGAAGATTGTGGTCCACATAAACACATTTGTGTTCTATTGCATTGTGTTGCCCGCAACTGTTATGGTGCCTGAGGTTGTGATCCCTAAATGGATTTGTGTTTATATCCCTTGCATCGTCACACTTTTAAAAGCCGTTGGAACTCCAAGGTCAATATTTATGTTATTTTTCCTTTCTTTTTTTTGCCTCAACATATGTTTGGTTCCACGGTCGCACATTTCAAAATTATGTTTTGGTTGGTCAAACATATTTCAATGA 1326 0.3801 MEAFQVVIGGVGMQIEFVWKHMREALVVPILKIAVFLCICMLLMDFVEKVYMAIVISFVKLCGRKPEKRYKWETIKDDDVELGNSNYPMVLVQIPMYNEREVYKLSIGAACGLSWPSDRIIIQILDDSTDQAIQELVQVECHIWESKGINIKYEVRDNRNGYKAGALKEGMKHSYVMQCDYVVIFDADFQPEPDFLCQTIPFLINNPEIGLVQGRWKFVNANECLMTRMQQMSLDYHFKVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLANLQVKSELPSTLKAYRYQQHRWSCGPANLFRKVVMEIFTNKKVSLWTKLHIVYSFFFVRKIVVHINTFVFYCIVLPATVMVPEVVIPKWICVYIPCIVTLLKAVGTPRSIFMLFFLSFFCLNICLVPRSHISKLCFGWSNIFQ* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4222 441 Pfam Glycosyl transferase family group 2 181 395 IPR001173 -
Tpr1g4222 441 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 1 422 - -
Tpr1g4222 441 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 366 IPR029044 -
Tpr1g4222 441 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 307 IPR029044 -
Tpr1g4222 441 CDD CESA_CaSu_A2 88 324 - -
Tpr1g4222 441 PANTHER - 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4222 Tpr-Chr1 49009806 49013659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4222 11 417 Miscellaneous Gene Families AT5G03760 73.219 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4222 K13680 - gmx:100782772 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4222 1 49009806 49013659 Tpr1g4179 1 48332360 48341011 ECH
Tpr1g4222 1 49009806 49013659 Tpr1g4222 1 49009806 49013659 ECH