Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2293 ATGAGGCACTCTTCTATTTTTCCAATATTATTCTCTATATATTTTGTTACATTATTTTTTGCTATACATGCTAGACATCATTTTCATACTAAACACAAACACTACTCACATTCTCATAAGTCATCATCTGAAATTTCATTATCTCCTACTCCACTACCTTCACCATATTATAGTGCTCCTCAAGAAGCTCCTAGCTTTGCACCTAGTGGTTCTTATGAAGAAGCTCCTAGTCCTTCACCTAGTAGTGATGAGAATAATTATCAAAATGCATCTGGATTGTTTGATGTAAGAAAATTTGGTGCCATTGGAGATGGAATAAGTGATGATACTGAGTCTTTTAAAATGGCTTGGGATACTGCTTGTCAAAGTGAATTAGCACTTAATGTTATCTTTGTTCCTAATGGTTTTTCCTTCATTGTTCAATCTAGTATCTTTACTGGTCCTTGTAAAGGTGGTTTAGTATTAAAGGTTGATGGCACTATAATGACACCTGATGGACCTGAATCTTGGCCAAAAAACAACAGCAAGCATCAATGGTTGGTCTTTTATAGAGTCAATGGTATGTCACTTGAAGGAAGTGGTTCTATTGATGGCAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATTGCCAGGACCTTGTGACAGCCCAGTTGCTATAAGGTTTTTCATGAGTTCCAATTTGACAGTACAAGGACTTAGGATAAAAAACAGTCCTCAATTCCATTTCAGATTTGATGGTTGCCAAAGTGTCCATGTTGAATCAATTTTCATAACAGCTCCAGCTTTAAGCCCTAACACTGATGGAATACACATTGAAAATACTAATGATGTCAAAATATATAATTCCATCATTTCCAATGGTGATGACTGTGTTTCCATTGGATCTGGTTGCTTTGATGTTGACATAAAAAACATTACATGTGGACCAGGTCATGGGATTAGCATTGGTAGTTTGGGAAACCACAATTCTAAAGCATGTGTATCAAACATAACAGTAAGGGATTCAGTTATAAAGTTATCAGATAATGGTGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTAACATTCAATAACATTCACATGGACACAGTAAAAAATCCAATTATAATTGACCAATTTTACTGCTTAAGTAAAGATTGCAGCAACAAAACCTCTGCAGTATTTGTATCAGACATTGTTTACACAAGTATAAAAGGAACTTATGATATAAGACACCCCCCTATGCATTTTGCATGCAGTGACTCTGTACCTTGCACTAACTTAACTCTCTCAGATATTGAGCTTTATCCTTCTCAAGGAGATATATTGAATGATGCTTTTTGTTGGAATGCTTATGGAAATTCAGAGACATTAACAATTCCTCCAGTTTTTTGTTTGCTGGATGGTGTTCCTCAGTCTATTCCAGCAAATGATATTGATCATTGTTGA 1473 0.3605 MRHSSIFPILFSIYFVTLFFAIHARHHFHTKHKHYSHSHKSSSEISLSPTPLPSPYYSAPQEAPSFAPSGSYEEAPSPSPSSDENNYQNASGLFDVRKFGAIGDGISDDTESFKMAWDTACQSELALNVIFVPNGFSFIVQSSIFTGPCKGGLVLKVDGTIMTPDGPESWPKNNSKHQWLVFYRVNGMSLEGSGSIDGRGQKWWDLPCKPHKGPNGTTLPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSIISNGDDCVSIGSGCFDVDIKNITCGPGHGISIGSLGNHNSKACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFNNIHMDTVKNPIIIDQFYCLSKDCSNKTSAVFVSDIVYTSIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELYPSQGDILNDAFCWNAYGNSETLTIPPVFCLLDGVPQSIPANDIDHC* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2293 490 PANTHER - 82 480 - -
Tpr1g2293 490 SUPERFAMILY Pectin lyase-like 91 476 IPR011050 -
Tpr1g2293 490 Pfam Glycosyl hydrolases family 28 125 444 IPR000743 GO:0004650|GO:0005975
Tpr1g2293 490 MobiDBLite consensus disorder prediction 67 86 - -
Tpr1g2293 490 ProSitePatterns Polygalacturonase active site. 314 327 IPR000743 GO:0004650|GO:0005975
Tpr1g2293 490 SMART pbh1 307 327 IPR006626 -
Tpr1g2293 490 SMART pbh1 366 387 IPR006626 -
Tpr1g2293 490 SMART pbh1 284 305 IPR006626 -
Tpr1g2293 490 SMART pbh1 234 283 IPR006626 -
Tpr1g2293 490 SMART pbh1 337 358 IPR006626 -
Tpr1g2293 490 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 82 480 - -
Tpr1g2293 490 MobiDBLite consensus disorder prediction 72 86 - -
Tpr1g2293 490 Gene3D - 79 472 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2293 Tpr-Chr1 25804675 25807822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2293 82 490 Glycoside Hydrolase AT1G02460 72.330 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2293 - - gmx:100792285 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2293 1 25804675 25807822 Tpr1g2293 1 25804675 25807822 ECH
Tpr5g1229 5 24474599 24482821 Tpr1g2293 1 25804675 25807822 ECH
Tpr6g0433 6 3517425 3520801 Tpr1g2293 1 25804675 25807822 PCT