Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1229 ATGAGTCTCATTCATAGTTTTTTTATCCTATGGATTACAATGATATTTTTCATCCATAATTTTGATAATGTGGAAGGAAGATACCATCATCACAAGAAAGGGAAGAAAACTTCCCCTGCACCAAGTGACCCATCACCACCTTCTTACAATCCTCCTCCTTCTCCTCCTACTCCTAGTGTTCCTTCTGATCCTTATCCATATCCAAATGATCCCGGAGAATCTCCTTCGGATTGCATTTTCGATGTAAGATCGTTTGGAGCAGTCGGAGATGGTGAAGCCGATGACACGGAAGCATTTAGAGCGGCATGGAAAGCAGCTTGTGCAGTTGATTCAGGAGTACTTTTAGCTCCTGAAAACAATTGTTTTAAAATCACTTCTACTATCTTTTCTGGTCCATGCAAACCAGGACTAGTTTTTCAGATTGATGGTACTTTGATGGCACCAGATGGACCAGATTGTTGGCCTGAGGCAGATAGTAAAAATCAATGGCTTGTGTTTTATAGATTAGATCAAATGACCTTAAATGGGACAGGAATCATTGAAGGCAATGGAGAACAATGGTGGGATCTTCCTTGCAAACCTCATAGGAGTCCAAGTGGAAATACTATATCAGGACCATGTGATAGTCCCACAATGATAAGGTTCTTCATGAGCTCCAATTTGGTGTTAAGAGGGTTGAAAATACAAAATAGTCCTCAATTCCATGTGAAATTTGATGGTTGTCAAGGAGTATTAATTGATGAATTATCAATTTCTGCACCTAAACTTAGTCCTAATACTGATGGAATCCACTTAGGAAACACAAAGGATGTTGGGATTTATAATTCAGTGATAAGCAATGGTGATGATTGTATTTCAATTGGTCCTGGTTGTTCAGATGTGAATGTGGATGGTGTTACTTGTGCTCCTACCCACGGAATTAGCATTGGAAGCCTTGGAGTACACAATTCCCATGCATGTGTCTCAAACCTAACAGTTCGCAACTCGATCATAAAAGAATCAGACAATGGACTAAGAATCAAAACATGGCAAGGAGGAACAGGATCAGTAACAGGTTTAACATTTGACAACATTCAAATGGAAAATGTCAGAAACTGCATCAACATAGACCAATTCTATTGCTTATCAAAAGAGTGTATGAATCAAACATCAGCAGTATATGTAAACAATGTGTCCTACAGAAAAATTAAGGGTACTTATGATGTTAGAACACCACCTATACATTTTGCTTGTAGTGACACTGTTGCTTGCACAAACATAACACTCTCTGAGATTGAACTTTTACCTTATGAAGGTGAATTAGTTGATGACCCTTTTTGTTGGAATGCTTATGGAAGACAAGAGACTTTAACTATACCTCCACTTGATTGTTTAAGGGAAGGTGAACCTGAGACTGTTGTGGAGTTATCTGAATATGAATGCAATAATTGA 1431 0.3843 MSLIHSFFILWITMIFFIHNFDNVEGRYHHHKKGKKTSPAPSDPSPPSYNPPPSPPTPSVPSDPYPYPNDPGESPSDCIFDVRSFGAVGDGEADDTEAFRAAWKAACAVDSGVLLAPENNCFKITSTIFSGPCKPGLVFQIDGTLMAPDGPDCWPEADSKNQWLVFYRLDQMTLNGTGIIEGNGEQWWDLPCKPHRSPSGNTISGPCDSPTMIRFFMSSNLVLRGLKIQNSPQFHVKFDGCQGVLIDELSISAPKLSPNTDGIHLGNTKDVGIYNSVISNGDDCISIGPGCSDVNVDGVTCAPTHGISIGSLGVHNSHACVSNLTVRNSIIKESDNGLRIKTWQGGTGSVTGLTFDNIQMENVRNCINIDQFYCLSKECMNQTSAVYVNNVSYRKIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELVDDPFCWNAYGRQETLTIPPLDCLREGEPETVVELSEYECNN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1229 476 Pfam Glycosyl hydrolases family 28 115 427 IPR000743 GO:0004650|GO:0005975
Tpr5g1229 476 Gene3D - 72 467 IPR012334 -
Tpr5g1229 476 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 6 465 - -
Tpr5g1229 476 SMART pbh1 321 342 IPR006626 -
Tpr5g1229 476 SMART pbh1 350 371 IPR006626 -
Tpr5g1229 476 SMART pbh1 268 289 IPR006626 -
Tpr5g1229 476 SMART pbh1 241 267 IPR006626 -
Tpr5g1229 476 MobiDBLite consensus disorder prediction 32 60 - -
Tpr5g1229 476 PANTHER - 6 465 - -
Tpr5g1229 476 SUPERFAMILY Pectin lyase-like 78 474 IPR011050 -
Tpr5g1229 476 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1229 Tpr-Chr5 24474599 24482821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1229 1 474 Glycoside Hydrolase AT1G48100 68.201 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1229 - - gmx:100785528 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1229 5 24474599 24482821 Tpr5g1229 5 24474599 24482821 ECH
Tpr5g1229 5 24474599 24482821 Tpr1g2293 1 25804675 25807822 ECH