Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0433 ATGAAGCATTCTCAAATTTTACCACTAGCATTCTGTTTAATTTTCCTTACTTTATTTCTGTTAGTTCATGCTAGACATCACCATTCACATAAAAAACATAAGCATTCACATTCTCATAAATCATATGTAACTTCACCGCCGCCACCTCCTCGTGATAATGCTTACTTCAATAATGCCTCTAGCATTTTTGATGTAAGATCATTTGGTGCCATTGGAGATGGAATAGAAGACGACACAGAAGCATTTAAGACAGCATGGGACACTGCATGCCAAAGCGAATCCGAAGTTAATGTTATTCTTGTTCCTCAAGGTTTCTCATTTGTCATTCAATCTACTATCTTCACCGGTCCTTGTCAAGGTGAATTAGTATTCAAGGTGGATGGCACTGTTATGGCACCTGATGGACCTGAATCTTGGCCAAAAAACAACAGTAGGCGACAGTGGCTGGTTTTTTACAGAATCAATGGAATGTCACTAGAAGGAAGTGGTTTAATAGATGGGAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGATCAAATGTGACAGCATTAGGACCTTGTGATAGTCCAATTGCTATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGAACTTAAGGTGAAGAACAGTCCTCAGTTCCATTTCAGATTTGATGGCTGCAATAATGTCCATATAAAATCAATTTACATTACAGCTCCAAAACTAAGTCCCAACACTGATGGAATTCACTTAGAAAATGTCAATGATGTGAAAATATATAACTCTGTGATATCTAATGGTGATGACTGTGTGTCCATTGGATCCGGGTGCTATGATGTTGATATAAAGAACATTACATGTGGACCTAGTCATGGAATTAGCATAGGTAGTTTAGGAAATCACAACACCAAAGCATGTGTATCAAACATTACTGTGAGAGATTCAATCATAAAAATGTCAGACAATGGAGTCAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTAACATTCAATAATATTAACATGATTAGTGTACGAAATCCAATCATAATTGACCAATTCTATTGCCTAACCAAAGATTGCACCAACAAAACCTCAGCAGTATCTATAACAAACATTCTTTACACAAACATCAAAGGAACTTATGATATAAAAAGCCCTCCTATGCATTTTGCTTGTAGTGATTCTGTCCCTTGCACCAACATAACACTCTCAGAAATTGAGCTTCTTCCATCACAAGGAGATATAGTGACTGATCCTTTTTGTTGGAATGCTTATGGAGATTTGGAGACATTAACTATTCCGCCGGTTTCTTGTTTGCTCGAAGGCATTCCTCAGTCGTTGTTAGACTATGGCATAGGTCATTGCTGA 1377 0.3805 MKHSQILPLAFCLIFLTLFLLVHARHHHSHKKHKHSHSHKSYVTSPPPPPRDNAYFNNASSIFDVRSFGAIGDGIEDDTEAFKTAWDTACQSESEVNVILVPQGFSFVIQSTIFTGPCQGELVFKVDGTVMAPDGPESWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGQKWWDLPCKPHKGSNVTALGPCDSPIAIRFFMSSNLTVQELKVKNSPQFHFRFDGCNNVHIKSIYITAPKLSPNTDGIHLENVNDVKIYNSVISNGDDCVSIGSGCYDVDIKNITCGPSHGISIGSLGNHNTKACVSNITVRDSIIKMSDNGVRIKTWQGGSGSVSGVTFNNINMISVRNPIIIDQFYCLTKDCTNKTSAVSITNILYTNIKGTYDIKSPPMHFACSDSVPCTNITLSEIELLPSQGDIVTDPFCWNAYGDLETLTIPPVSCLLEGIPQSLLDYGIGHC* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0433 458 Gene3D - 50 441 IPR012334 -
Tpr6g0433 458 PANTHER - 6 448 - -
Tpr6g0433 458 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 448 - -
Tpr6g0433 458 Pfam Glycosyl hydrolases family 28 95 412 IPR000743 GO:0004650|GO:0005975
Tpr6g0433 458 ProSitePatterns Polygalacturonase active site. 282 295 IPR000743 GO:0004650|GO:0005975
Tpr6g0433 458 MobiDBLite consensus disorder prediction 30 49 - -
Tpr6g0433 458 SUPERFAMILY Pectin lyase-like 59 446 IPR011050 -
Tpr6g0433 458 SMART pbh1 305 326 IPR006626 -
Tpr6g0433 458 SMART pbh1 275 295 IPR006626 -
Tpr6g0433 458 SMART pbh1 252 273 IPR006626 -
Tpr6g0433 458 SMART pbh1 334 355 IPR006626 -
Tpr6g0433 458 SMART pbh1 225 251 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0433 Tpr-Chr6 3517425 3520801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0433 57 458 Glycoside Hydrolase AT1G02460 70.936 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0433 - - gmx:100778836 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0433 6 3517425 3520801 Tpr1g2293 1 25804675 25807822 PCT