Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1147 ATGGCGAAGGGCGAGAAAAAGCCAGCGGAGAAGAAGCCAGCAGAGAAGGCACCGGCAGAGAAAACAAAGGCTGAGAAGAAGATCCCAAAGGAAGCATCCTCCACCGACAAGAAGAAGAAGAAACACAAGAAGAGCGTAGAAACCTACAAGATCTACATCTTCAAGGTTCTGAAGCAGGTTCATCCAGATATCGGAATCTCAAGCAAGGCTATGGGGATAATGAACAGTTTCATCAATGATATATTTGAGAAACTCGCTCAGGAATCTTCTAGACTCGCTCGCTACAACAAGAAGCCTACTATCACTTCTCGCGAGATCCAGACTGCTGTTCGTCTTGTTCTTCCCGGCGAGCTTGCTAAGCACGCCGTCTCCGAAGGAACCAAGGCTGTTACGAAATTCACTAGCTCTTGA 411 0.4745 MAKGEKKPAEKKPAEKAPAEKTKAEKKIPKEASSTDKKKKKHKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1147 136 MobiDBLite consensus disorder prediction 1 35 - -
Tpr1g1147 136 PANTHER HISTONE H2B 4 136 - -
Tpr1g1147 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
Tpr1g1147 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 Pfam Core histone H2A/H2B/H3/H4 6 112 IPR007125 GO:0003677
Tpr1g1147 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Tpr1g1147 136 PANTHER HISTONE H2B 4 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr1g1147 136 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1147 Tpr-Chr1 10374677 10375368 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1147 K11252 - ming:122057363 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1386 6 14911749 14915166 Tpr1g1147 1 10374677 10375368 ECH
Tpr1g2437 1 27477307 27481691 Tpr1g1147 1 10374677 10375368 ECH
Tpr1g1147 1 10374677 10375368 Tpr1g1147 1 10374677 10375368 ECH