Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2437 ATGTGGGCTCTTCGTCGAACTTCGATTCGCCTCACGCTAAGAAATCAAGTACTTAATCGTGCTTCTTGTGTCAAATTAATACCAAACACGGTGGTGGAATATGAGGATGCTGTTCCTCATCATGGTAGATTTCTGTCAACCAGCCACACATTTTACCGCACAGACCACAAATTTACTGTCAGCAGCCGGCAACTTTCGTCACAAGCTGATGCTAGTAACAACAAAGAGGATGATGTTGTTGATAATGATGGCGTGGAGATTGAAGATCGTTTGTCTGAACCGGACCTGACTGATGGTGATGACGGTGATGATGGTGGGAAATTACAAGATGAGCTGGATTTGTCTGATACTGAGAGTGATCCAGCTGAGGAGGAGAAAACATCACGGAGAGCAAAGAGTCGGTCTGAATTATTCAAGGCGATTGTAAGTGTTCCAGGTTTGTCTGTTGATTCTGCTCTCAACAAGTGGGTTGAAAAAGGTAAAACATTAACCAGGCAAGAGATCGTGCTGGCCTTGATTAATCTTCGAAAGCGTAAAATGTATGGAAGGGCTTTGCAGCTCTTGGATTGGCTAGAGTCAAACGAAAAGCTTGAATTTACTGAGAAAGAGTATGCTTCTAAACTTGATATGATTGCCAAATTGCGTGGCCTACAAAAGGCAGAACAATTCCTTGCGCATGTTCCAAACTCTTTCAGAGGAGAATTATTATACAGAACATTACTAGCTAACTATGCTAGTGTGTTCAATTTGGGTAAAACAGAGGAAACATTCAACAAAATTAGGGAGTTAGGTTTTCCTATTACACCATTTGCTTGTAACCAGTTACTTATCCTTTATAAGAAGATTGACAAGAAGAAAATAGCTGACGTTTTACTTATGATGGAAAAGGAGAATGTCAAACCTTCTCCTTTTACTTATAAAATTTTAATAGATGCTAAGGGCCTTTCCAATGATATTGAAGGAATGTCTCAAATTGTTGAGACAATGAAGGCAGAAGGTGTCGAACTAGACCACCAAACACAGGCAGCCCTGGCTAGGCATTATGCCTCTGCCGGGCTTACAGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAGACTTGAAAGAGAATATGTGGGTATGTCCAACCTTGCTCCGCCTTTATGCAATTTTGCGAAGGGATGATGAAGTGGAAAGAATTTGGAAGGCTTGTGAGTCAAAACCTCGGGTTGAGGACTGCCTTGCAGCAGTTGAAGCTTGGGGCAAGCTGAAGAAAATTGAAAAAGCAGAGGAAGTTTTTGAGATGATGTCAAATAAATGGAAACTTACCGCCAAAAACTACTCAGTACTCTTGAAAATTTATGCAAGGAATAAGATGCTAATCAAGGGTAAGGATCTTATTAAGAAAATGGGAGATAGTGGGTGCGTAATAGGTCCAACGACATGGGATTCAATTGTGACACTTTATGTTCAAGCAGGGGAAGTCGAAAAGGCAGACGCTGTTTTGCAGAAGGCACTACAGCAGGGTAAACTGAGGCCAATGTTTAATACTTATATGACTATTATGGAGCAGTATGCAAGGAGAGGTGACGTCCATAATGCGGAGAAGATGTTCTATAGATTGAGACAAGCTAATTATGTTTCTAGAATAACTCCGTTCCATGCTCTAGCACAGGCTTATAAAAATGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACATATTTCCCAACAAAGCTTTGGCTAACCAATTGGCTCAACTTGATCCATTTAAGAAAACTGCAGTTTCCGATTTGCTTGATTGA 1803 0.4093 MWALRRTSIRLTLRNQVLNRASCVKLIPNTVVEYEDAVPHHGRFLSTSHTFYRTDHKFTVSSRQLSSQADASNNKEDDVVDNDGVEIEDRLSEPDLTDGDDGDDGGKLQDELDLSDTESDPAEEEKTSRRAKSRSELFKAIVSVPGLSVDSALNKWVEKGKTLTRQEIVLALINLRKRKMYGRALQLLDWLESNEKLEFTEKEYASKLDMIAKLRGLQKAEQFLAHVPNSFRGELLYRTLLANYASVFNLGKTEETFNKIRELGFPITPFACNQLLILYKKIDKKKIADVLLMMEKENVKPSPFTYKILIDAKGLSNDIEGMSQIVETMKAEGVELDHQTQAALARHYASAGLTEKTEAILKEIEGEDLKENMWVCPTLLRLYAILRRDDEVERIWKACESKPRVEDCLAAVEAWGKLKKIEKAEEVFEMMSNKWKLTAKNYSVLLKIYARNKMLIKGKDLIKKMGDSGCVIGPTTWDSIVTLYVQAGEVEKADAVLQKALQQGKLRPMFNTYMTIMEQYARRGDVHNAEKMFYRLRQANYVSRITPFHALAQAYKNAKLPAYGIRERMKADNIFPNKALANQLAQLDPFKKTAVSDLLD* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2437 600 MobiDBLite consensus disorder prediction 93 107 - -
Tpr1g2437 600 Gene3D Tetratricopeptide repeat domain 146 285 IPR011990 GO:0005515
Tpr1g2437 600 Gene3D Tetratricopeptide repeat domain 286 389 IPR011990 GO:0005515
Tpr1g2437 600 MobiDBLite consensus disorder prediction 63 131 - -
Tpr1g2437 600 PANTHER OS12G0527900 PROTEIN 26 600 - -
Tpr1g2437 600 PANTHER DNA-BINDING PROTEIN 26 600 - -
Tpr1g2437 600 Gene3D Tetratricopeptide repeat domain 411 597 IPR011990 GO:0005515
Tpr1g2437 600 MobiDBLite consensus disorder prediction 74 92 - -
Tpr1g2437 600 Pfam PPR repeat 476 501 IPR002885 -
Tpr1g2437 600 Pfam PPR repeat 414 433 IPR002885 -
Tpr1g2437 600 Pfam PPR repeat 442 470 IPR002885 -
Tpr1g2437 600 Pfam PPR repeat 512 539 IPR002885 -
Tpr1g2437 600 Pfam Pentatricopeptide repeat domain 270 312 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2437 Tpr-Chr1 27477307 27481691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2437 145 539 EF-hand Containing Proteins AT1G02150 25.728 4.10e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2437 - - mtr:MTR_1g050750 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2437 1 27477307 27481691 Tpr1g1147 1 10374677 10375368 ECH
Tpr1g2437 1 27477307 27481691 Tpr1g2437 1 27477307 27481691 ECH