Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1386 ATGTTGAATCTTCGTCGAATTTCATTACCTCTCAGTAGGATGAGAGGTTTAAATGTAAGGGTTTCTTGTGTCAAATTAATGCCAAATACTTGTGTTGAAAATGAGGCTGGTATCTCTGATTCTCCTGAAATAGTTTCCGGTAATGGAGGTTTTTTGTTGCGGAATAGATGTTATCATTCTGGGTATGGTTCTATGGGGTTTAGTGTTGGTAGACGCGAGTTTTCTTCGGAAGCCGGTGCAAAAGATACCAAAGATGAGGATGATGAATTGGAGGAGGGGTTTTCAGAGTTGGAGGAGACGCCTGTGGGTGATGAAGGAGAAAAGTTGTTGGATTCTGATTCAGAAACAGAACTGTCTGATGATAGTGTTAGTGAAGTATCTGACATTGAGGAACCACACAATGAGCTGGAGTTACCGTTATCGCATGACGAGGGTGGGATTTCGGAGGTGAAGAAATTTAGTCGAAAAAGGGTTGAGTCTGAACTATTCAAGGCGATTATGGATGCTCCGGGTCACTCTATTCATACGGCTTTGGATAAGTGGGTTGAAGATGGGAAGGAACTGAACAGAGAGGAGATATCGTTGGCTATGGTTAATCTTCGGAAACATAAGATGTATGAGAGAGCTTTGCAGCTCTCGGAGTGGCTTCAGTCAAAAAATCATCTTGAATTTGTTGAAAGGGATTACGCTTCCCGGCTTGATTTGATTGCCAAACTGCATGGGCTATATAAGGCAGAAGTATACGTTGAGAGTATTCCAAAATCTTTTAGAGGTGAGATAATATACCGAACTTTAATGGCTAACTGTGTGACTCAGAACAATATGAAGAAAGCAGAGGAGATTTTTAATAAAATGAAGGATTTAGAGTTTCCTCTTACAGTATTTGTATGCAATCAGTTGCTCCTTCTGTATAAGAGGAACGACAGAAAGAAAATAGCCGATCTGTTATTATTGATGGAGCACGAGAATGTCAAACCTTCTCCTTTGACTTACAAAATTTTAATTGATGTAAAAGGGCAGTCTAATGATATTGATGGAATGGATCAAATTGTTGATAAAATGAAGGCCGACGGTATTGAACCAGATGTCCAAACAAAGGCAGTTTTGGTTGGGCATTACATCTCAGCTGGGCTTGCTGATAAAGCTAAAACATTGTTGAAGGAGATGGAAGGGGAAAACTTGAAGGAGAATCGGTGGGTATGTCGGGCTTTGCTTCCTCTCTATGCAAACTTGGGCATGGCAGATGAAGTGGGAAGAGTTTGGAAGGTCTGTGAGACACACCCTTGGCCTGAGGAGTGTTTGGCTGCAATTGAAGCCTGGGGCAAGTTGAGTAAAATCGATGAAGCAGAGGCAGTTTTTGAGAGGATGTCAAAAAAGTGGAAGCTTACGTCCAAGCATTGCTCAGTACTACTGAAGGTTTATGCAAACCACAAGATGCTAATGAAGGGCAAAGATCTTATTAAGCGAATGGCAGATAGTGGGTGTCGAATAGGCCCGTTGACCTGGGATGCATTGATCAAACTTTATGTCAAAGCTGGGGAAGTGGAGAAGGCAGATAGTGTTCTTCAGAAAGCAGTCATGCAAACTCAGGTGAAGCCATTATTTTCTTCCTATATCACTATTCAGGAGCAGTATGCTAAGAGGGGTGACATCCATAATACAGAAAAGATCTTCTATAGAATGAAACAAGTTGGTTATGCTCCTCGAATAAGGCAGTACCAAATTCTTATTGAGGCCTATATAAATGCCAAGGTTCCAGCTTATGGGATTAGGGACAGGTTGAAAGCAGATTCTATATATCCCAACAGAAATTTGGGTAACATGTTGATTCAAGTTGATGGATTTAGGAAGAGTCAGGTTTCCGATTTGCTTGATTGA 1878 0.4121 MLNLRRISLPLSRMRGLNVRVSCVKLMPNTCVENEAGISDSPEIVSGNGGFLLRNRCYHSGYGSMGFSVGRREFSSEAGAKDTKDEDDELEEGFSELEETPVGDEGEKLLDSDSETELSDDSVSEVSDIEEPHNELELPLSHDEGGISEVKKFSRKRVESELFKAIMDAPGHSIHTALDKWVEDGKELNREEISLAMVNLRKHKMYERALQLSEWLQSKNHLEFVERDYASRLDLIAKLHGLYKAEVYVESIPKSFRGEIIYRTLMANCVTQNNMKKAEEIFNKMKDLEFPLTVFVCNQLLLLYKRNDRKKIADLLLLMEHENVKPSPLTYKILIDVKGQSNDIDGMDQIVDKMKADGIEPDVQTKAVLVGHYISAGLADKAKTLLKEMEGENLKENRWVCRALLPLYANLGMADEVGRVWKVCETHPWPEECLAAIEAWGKLSKIDEAEAVFERMSKKWKLTSKHCSVLLKVYANHKMLMKGKDLIKRMADSGCRIGPLTWDALIKLYVKAGEVEKADSVLQKAVMQTQVKPLFSSYITIQEQYAKRGDIHNTEKIFYRMKQVGYAPRIRQYQILIEAYINAKVPAYGIRDRLKADSIYPNRNLGNMLIQVDGFRKSQVSDLLD* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1386 625 MobiDBLite consensus disorder prediction 84 100 - -
Tpr6g1386 625 MobiDBLite consensus disorder prediction 101 115 - -
Tpr6g1386 625 TIGRFAM PPR: pentatricopeptide repeat domain 501 524 IPR002885 -
Tpr6g1386 625 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Tpr6g1386 625 TIGRFAM PPR: pentatricopeptide repeat domain 261 291 IPR002885 -
Tpr6g1386 625 Pfam PPR repeat 501 524 IPR002885 -
Tpr6g1386 625 Pfam PPR repeat 467 495 IPR002885 -
Tpr6g1386 625 Pfam PPR repeat 437 459 IPR002885 -
Tpr6g1386 625 PANTHER OS12G0527900 PROTEIN 50 625 - -
Tpr6g1386 625 Pfam Pentatricopeptide repeat domain 529 581 IPR002885 -
Tpr6g1386 625 Coils Coil 80 100 - -
Tpr6g1386 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Tpr6g1386 625 Gene3D Tetratricopeptide repeat domain 258 438 IPR011990 GO:0005515
Tpr6g1386 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Tpr6g1386 625 Pfam Pentacotripeptide-repeat region of PRORP 262 420 IPR033443 -
Tpr6g1386 625 PANTHER OS01G0280400 PROTEIN 50 625 - -
Tpr6g1386 625 MobiDBLite consensus disorder prediction 126 140 - -
Tpr6g1386 625 MobiDBLite consensus disorder prediction 77 140 - -
Tpr6g1386 625 Gene3D Tetratricopeptide repeat domain 439 623 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1386 Tpr-Chr6 14911749 14915166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1386 165 565 EF-hand Containing Proteins AT1G02150 23.671 6.38e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1386 - - mtr:MTR_7g089770 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1386 6 14911749 14915166 Tpr1g1147 1 10374677 10375368 ECH
Tpr6g1386 6 14911749 14915166 Tpr6g1386 6 14911749 14915166 ECH