Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0710 ATGGGGGCTAATATTTCTTCAACTACATCAATAAGAGAAAAATATGATGAAGGGTCAAATTCTTCATCATCAAGAACTAGTCTTGGTGATATTCCAGAGAGTTGCATCTCTTCTATCCTTATGAATCTTGATCCACTTGATATATGCAAATTGGCTAGAGTCAATCATGCTTTTCATAGAGCTTCCTCAGCTGATTTTGTGTGGGAATCCAAGTTACCATCATGCTACAATTTTCTTGTTAATAAAGTTCTTGGTCAAGAAAATCTTTCTACTATGACTAAGAAAAATATCTACACAAAACTCTGTCAACGTAATCTCCTTGATGATGGTACCAAAGAAGTTTTGTTGGATAAATGTAGTGGACAAGTTTGTTTATTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGAAGATAGAAGATATTGGATTTATATTCCAACTGAAGAATCAAGGTTTAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAGTAGGGGAGTTAGAGTTTGAATTCCCTGTGGGTAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAGTCATCGAAACGATTGGGGCGGCGTGTGTGCAACGTTGATCAAGTGCACGGCTGGGACATCAAGCCGGTTCGATTCCAACTCTCTACATCTGACGGTCAGCGTTCGATCTCCGAGTGTTACTTGAATGGGCCAGGTGAATGGGTTTATTACCATGTAGGAGATTTCATGGTTGTAAAGCCCAATGAGCCCATAAAAATAAAGTTTTCTTTGGCCCAAATTGATTGTACTCATACCAAAGGTGGCCTCTGTATAGATAGTGCAATTATTTGTCCAACTGAGTTCAGAGAAAGACTCAAAACAACTTAG 876 0.3824 MGANISSTTSIREKYDEGSNSSSSRTSLGDIPESCISSILMNLDPLDICKLARVNHAFHRASSADFVWESKLPSCYNFLVNKVLGQENLSTMTKKNIYTKLCQRNLLDDGTKEVLLDKCSGQVCLFMSSKSLKITGIEDRRYWIYIPTEESRFKNVAYLQQMWWVEVVGELEFEFPVGSYSITFRLQLGKSSKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQRSISECYLNGPGEWVYYHVGDFMVVKPNEPIKIKFSLAQIDCTHTKGGLCIDSAIICPTEFRERLKTT* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0710 291 Gene3D - 14 106 - -
Tpr1g0710 291 MobiDBLite consensus disorder prediction 1 26 - -
Tpr1g0710 291 SMART fbox_2 31 70 IPR001810 GO:0005515
Tpr1g0710 291 Pfam Phloem protein 2 123 281 IPR025886 -
Tpr1g0710 291 PANTHER F-BOX PROTEIN 1 289 - -
Tpr1g0710 291 SUPERFAMILY F-box domain 16 99 IPR036047 GO:0005515
Tpr1g0710 291 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Tpr1g0710 291 PANTHER F-BOX PROTEIN PP2-A15 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0710 Tpr-Chr1 6021243 6030995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0710 - - gmx:100795463 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0710 1 6021243 6030995 Tpr2g3852 2 41330786 41334252 ECH
Tpr1g0710 1 6021243 6030995 Tpr1g0710 1 6021243 6030995 ECH
Tpr2g4228 2 45385489 45388680 Tpr1g0710 1 6021243 6030995 PCT