Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3938 ATGTCTCTGTTCCCATGTTATCAACATTCTCTTCAATCCTTATTCTGTTTCTTCCTTTTCCTCCTTTTCAGAGGAGTTTCAGGGGCCACATTTACGTTTGTGAATAAGTGCGACTACACAGTATGGCCGGGTGTACTGGGAAAACCTGACCTCGGAAGCACAGGATTCGACCTCCCAAAGGGAACCTCTCGAAGCTTCCAAGCCCCAACGGGCTGGTCCGGAAGATTCTGGGCCCGCACCGACTGTAAATTCGACGATTCCGGCCACGGAACTTGCGCCACCGGCGACTGCGGCTCCGGCGAAATCGAGTGCAACGGCGCCGGCGCCACTCCTCCGGCTACCCTCGCCGAGTTCACCCTGGGCTCCTCCGGCTCCCAGGACTACTACGACGTCAGCCTCGTGGACGGCTACAATCTGCCGATGATGGTGGATGCGAGCAGAGGGTCAGGATCGTGCTCGAGCACAGGGTGCGCGGCGGACATCAACCGTCGGTGTCCGTCGGAACTGAGAGTGGAGGGCGGTGGCGCGTGTAACAGCGCGTGTGGAGCGTTTAAGAAGCCGGAGTATTGTTGTGACGGGGCGTTTGGTTCTCCGTCGACGTGTAAGCCGTCGATGTACTCGGAGATGTTCAAGTCGGCGTGTCCGAAATCTTACAGTTATGCTTACGATGATGCTACAAGCACCTTCACTTGTACAGGAGCCGATTATACCATCACATTCTGTCCTTCTTCCCCAAGCTTAAAGTCTTCAACAGATTCGGCTCCAAAAGGAACAGATTCATCTTCAGGATCAGGATCAGGATCAGGAGTGGAAGAAACAGCACTAGCTAGTACTTCATGGCTAGCAAATATGGCGACAGGAGCTGCATCAAGAAATTATGATCATGGAGCTTCAAACTCTGCATTTTTCTTGGCTGTTACTATCATTCTTTCACTTTTGGTCTTGTAG 948 0.5295 MSLFPCYQHSLQSLFCFFLFLLFRGVSGATFTFVNKCDYTVWPGVLGKPDLGSTGFDLPKGTSRSFQAPTGWSGRFWARTDCKFDDSGHGTCATGDCGSGEIECNGAGATPPATLAEFTLGSSGSQDYYDVSLVDGYNLPMMVDASRGSGSCSSTGCAADINRRCPSELRVEGGGACNSACGAFKKPEYCCDGAFGSPSTCKPSMYSEMFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSSPSLKSSTDSAPKGTDSSSGSGSGSGVEETALASTSWLANMATGAASRNYDHGASNSAFFLAVTIILSLLVL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3938 315 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Sto6g3938 315 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Sto6g3938 315 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Sto6g3938 315 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Sto6g3938 315 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Sto6g3938 315 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Sto6g3938 315 Gene3D Thaumatin 29 242 IPR037176 -
Sto6g3938 315 MobiDBLite consensus disorder prediction 246 271 - -
Sto6g3938 315 CDD TLP-PA 30 241 - -
Sto6g3938 315 SMART tha2 31 242 IPR001938 -
Sto6g3938 315 Pfam Thaumatin family 35 242 IPR001938 -
Sto6g3938 315 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 10 267 - -
Sto6g3938 315 ProSiteProfiles Thaumatin family profile. 28 242 IPR001938 -
Sto6g3938 315 SUPERFAMILY Osmotin, thaumatin-like protein 29 243 IPR037176 -
Sto6g3938 315 PANTHER OS03G0233200 PROTEIN 10 267 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3938 Sto-Chr6 43492959 43494239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3938 10 246 Receptor kinase-like Gene Family AT5G38280 48.996 7.44e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3938 - - gmx:100802906 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3938 6 43492959 43494239 Sto6g3938 6 43492959 43494239 ECH
Sto2g0932 2 8058483 8059380 Sto6g3938 6 43492959 43494239 ECH
Sto10g0079 10 599240 601227 Sto6g3938 6 43492959 43494239 ECH