Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3469 ATGCGGTGCAGAGCATGGGGTGAGGTGCAAGAGGTTGAAGGAGGCATGTACAAAGATCGAGGCGGTGTTGGCTCCAAGTCCGAGGTGTCTACCGTTGATCGCAAGCGAATCAACGATGTCCTTGACAAGCAGCTCCAGCGATCCTCCCCATCCACTTCTAGGGCAGTCAAGGCCAAGGATTGGTCGGTGCAATCCGTTTTGGCCCATAAGCTACCGCATGATAACAGAGACTCTCGCTCTGCCACCATCGCTAAGAATTCCAATGCTTCAGACGAGGAATCTGAAACCGACAGTGAAGCTTCAGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTGCAATCTGAGAGGAAATGAATTCTTTTGTGAAGTTGATGAAGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTACCTTACTATGATTATGCACTCGATTTAATTTTGGATGTTGAATCCTCCCACGGAGACATGTTCACAGAGGAACAAAATGAGTTAATTGAATCAGCCGCAGAGATGCTTTATGGTCTGATTCATGCCCGATATGTTTTGACAAATAAAGGAATGGCTGCTATGCTGGACAAATACAAAAACTATGACTTCGGAAGATGTCCAAGAGTTTACTGCACTGGGCAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCTCGGTCAAGTACGGTGAAGATATACTGCCCTAGCCACCCAAGCCACCTCAGAGCTATGTTCAAAGAGTTTTTGGTTTCAAAGTTCACAAGCTGTGAAGCTGAATGGAATTTCAAGCTTTCATCAAAGGAAGAGTCTGAACATGTCTGGTTTATCTTGGCTCTGTGCTGTGACGAGGTGGAAAGAGGTATGTACAAAGAGCGAGGAGGTGTTGGGTCCAAATCGGAGGTAGGTTCCGTTGATCGGAAGCAAATCAACGACGTTCTCGACAAGCAGCTCGAGCGATCCTCGCCATCCACATCTAGGGTAATCAACGGCAAGGATAGGTCGGCGCAATCTGTATTGACGGGCAAGCTACCCGCTGATCACAGGGATTCTCGCTCTGCGCCCATCTCTAAGAATTCTAACGCTTCAGATGAGGAATCTGAAACAGACAGTGAAGAGTCGGATGTTAGTGGTTCTGACGGGGATGACACATCTTGGATCTCATGGTTCTGCAATTTGAGAGGAAATGAATTCTTTTGCGAGGTTGATGACGATTATATCCAAGATGACTTTAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCACTAGATTTAATTTTGGATGTTGAATCCTCCCACGGTGACATGTTCACAGAGGAACAAAATGAGTTAATCGAATCAGCAGCTGAGATGCTTTATGGCCTGATTCATGCCCGATACATATTGACAGGCAAAGGAATGGCTGCTATGCTGGACAAGTATAAAAACTATGATTTTGGGAGATGCCCAAGGGTTTACTGTTCTGGACAACCCTGTCTTCCAGTTGGTCAGTCAGACATTCCAAGATCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACGACATTCCCACACCTCTTCCTGATGACCTACGGACAGCTGAAGCCACAGAAGCCTTTGCAGAGCTATGTTCCAAGAGTCTTTGGCTTCAAAATTCATAAGCCATGA 1737 0.4548 MRCRAWGEVQEVEGGMYKDRGGVGSKSEVSTVDRKRINDVLDKQLQRSSPSTSRAVKAKDWSVQSVLAHKLPHDNRDSRSATIAKNSNASDEESETDSEASDVSGSDGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTNKGMAAMLDKYKNYDFGRCPRVYCTGQPCLPVGQSDIPRSSTVKIYCPSHPSHLRAMFKEFLVSKFTSCEAEWNFKLSSKEESEHVWFILALCCDEVERGMYKERGGVGSKSEVGSVDRKQINDVLDKQLERSSPSTSRVINGKDRSAQSVLTGKLPADHRDSRSAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTGKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPLQSYVPRVFGFKIHKP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3469 578 PANTHER CASEIN KINASE II SUBUNIT BETA 295 577 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PANTHER CASEIN KINASE II SUBUNIT BETA 16 243 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 MobiDBLite consensus disorder prediction 12 60 - -
Sto6g3469 578 ProSitePatterns Casein kinase II regulatory subunit signature. 492 523 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 MobiDBLite consensus disorder prediction 43 59 - -
Sto6g3469 578 MobiDBLite consensus disorder prediction 319 338 - -
Sto6g3469 578 MobiDBLite consensus disorder prediction 322 338 - -
Sto6g3469 578 PANTHER CASEIN KINASE II SUBUNIT BETA-2 16 243 - -
Sto6g3469 578 PANTHER CASEIN KINASE II SUBUNIT BETA-2 295 577 - -
Sto6g3469 578 Gene3D - 489 563 - -
Sto6g3469 578 Gene3D - 210 246 - -
Sto6g3469 578 SUPERFAMILY Casein kinase II beta subunit 110 243 IPR035991 GO:0005956|GO:0019887
Sto6g3469 578 SUPERFAMILY Casein kinase II beta subunit 389 577 IPR035991 GO:0005956|GO:0019887
Sto6g3469 578 MobiDBLite consensus disorder prediction 73 108 - -
Sto6g3469 578 Pfam Casein kinase II regulatory subunit 391 574 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 Pfam Casein kinase II regulatory subunit 112 243 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 MobiDBLite consensus disorder prediction 344 387 - -
Sto6g3469 578 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 384 488 IPR016149 GO:0005956|GO:0019887
Sto6g3469 578 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 105 209 IPR016149 GO:0005956|GO:0019887
Sto6g3469 578 SMART CK_II_beta_2 391 574 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 SMART CK_II_beta_2 112 261 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 391 407 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 408 422 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 463 484 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 488 509 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 510 531 IPR000704 GO:0005956|GO:0019887
Sto6g3469 578 PRINTS Casein kinase II regulatory subunit family signature 538 555 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3469 Sto-Chr6 40333521 40340238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3469 K03115 - gmx:100799304 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3469 6 40333521 40340238 Sto11g1861 11 17373254 17376291 CCT
Sto11g1863 11 17395215 17398142 Sto6g3469 6 40333521 40340238 CCT
Sto6g3469 6 40333521 40340238 Sto6g3469 6 40333521 40340238 ECH