LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu9g1461	ATGGATACTCCACAACCACAACTCAACATTGTGGGTTCTTCCCCCACCCCCCCTAACGTTACTTCTATGCCTCCATCTTCATCTTTACCCCGACCATCACCTCCCATCTCAGCTGCCCCTCAACCTGGATCATCATCTTCTGCTCCTCTTCCCGGTGTGCATGAGCATGAGGCAAACAACTACAAGAATCGTTTGCAGACGTTCACGCAACGGTCCAATATAGCACTTCCCGTGTATATAACTGTTAATGAGGGGGTCCAACATGATCCAAAGTATAGGACAAAAGTGTTGGTGGACGGAGTGAGTTACCCTTCCCCGAACACTTTCTCTCAAGTAAAAGCGGCTGAGCAAGATGGGGCTAGAGTTGTATTAGAGAATTTGCCTGTAAAATTTAGAGCTGAAGGGTGTCCAGTTATTTGCGAGAATACTCCTTTTTCCAAATCTATCTTGAATGAATACACTACTAAGCTGAAGGTGGAAAAGCCTACATATAACACTGTTCGGCTAGAGGGGATGCTTCCTCTTTTTGTATCATCTTTGACCTTCAATGGTACACAGTACAGTGGTGATGCTGCTAGAAGCAAAAAGAAGCTGAGCAGTGATGCTACCTCAGGAACACTTTATGAGATAATAaagtcaaaatataaaatttttgatgcAGTCAGACCGGGCAAATCCCAATGTGTTGATGCTCTTAATGCTAGTTCAGCAGCCATGGCAAATACAGGACCTACCTTAGTTTCACCAGATCATACGGATAAGGAGGTTGCAGTTCCTGTGGCTGCTAATagtaatgaaacaaaaattgcaCTTCCTGTGCCTTCTACAATGCCTTCCGTGAATCCAGAATCTCAGATGCCTAAACATGTACCATCCTTGGTTGCTGTTCCTGTGGCCGCTAATAgcaatgaaacaaaaattgcaCTTCCTGCGCCTTTTACAATACCTTCCTTGAATCCACAATCTCTGATGCCTAAACATGTACCATCCGTGGTTGCAGTTCCTGTGGCTGCTAATAGCAACGAAACACAAATTGCACTTCTTGTGCCTTCTACAATGCTTTCCTTGAATCTACAATCTCTGATGCCTAAGCATGTACCATCCCTGGTTGCAGTTCCTGTGGCTGCTAACAGCAATGAAACACAAATTGCACTTCCTGTGCCTTCTACAATGCCTTCCTTGAGTCCACAATCTCTGATGCCTAAGCATGTACCATCCCTGGTTGCAGATCCTGTGGCTGCTAATAGCAACGAAACACAAATTGCACTTCCTGTGCCTTCTACAATGCCTTCCTTGAATCCACAATCTCAGATGCCAGAGCATGTACCATCCCTTCAAGCGACCGTCGCTGAGCTTCCAAATCTGAATCTCCGTCCAGGTTCAGAACAGCCTGTTGGCAATGGTTCGGGTGAACTATCTATTGGCGATGGTTCAGATCAACTGTCTAGTGGTGATGGTTCAGGTTCAAAAAAGCGGCAACGGTTGGAATGA	1491	0.44	MDTPQPQLNIVGSSPTPPNVTSMPPSSSLPRPSPPISAAPQPGSSSSAPLPGVHEHEANNYKNRLQTFTQRSNIALPVYITVNEGVQHDPKYRTKVLVDGVSYPSPNTFSQVKAAEQDGARVVLENLPVKFRAEGCPVICENTPFSKSILNEYTTKLKVEKPTYNTVRLEGMLPLFVSSLTFNGTQYSGDAARSKKKLSSDATSGTLYEIIKSKYKIFDAVRPGKSQCVDALNASSAAMANTGPTLVSPDHTDKEVAVPVAANSNETKIALPVPSTMPSVNPESQMPKHVPSLVAVPVAANSNETKIALPAPFTIPSLNPQSLMPKHVPSVVAVPVAANSNETQIALLVPSTMLSLNLQSLMPKHVPSLVAVPVAANSNETQIALPVPSTMPSLSPQSLMPKHVPSLVADPVAANSNETQIALPVPSTMPSLNPQSQMPEHVPSLQATVAELPNLNLRPGSEQPVGNGSGELSIGDGSDQLSSGDGSGSKKRQRLE	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu9g1461	496	Pfam	Double-stranded RNA binding motif	146	197	IPR014720	-
	Ssu9g1461	496	Pfam	Double-stranded RNA binding motif	61	127	IPR014720	-
	Ssu9g1461	496	SUPERFAMILY	dsRNA-binding domain-like	59	127	-	-
	Ssu9g1461	496	MobiDBLite	consensus disorder prediction	455	496	-	-
	Ssu9g1461	496	PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	50	306	-	-
	Ssu9g1461	496	SMART	DRBM_3	61	128	IPR014720	-
	Ssu9g1461	496	SMART	DRBM_3	146	212	IPR014720	-
	Ssu9g1461	496	MobiDBLite	consensus disorder prediction	1	55	-	-
	Ssu9g1461	496	MobiDBLite	consensus disorder prediction	18	39	-	-
	Ssu9g1461	496	MobiDBLite	consensus disorder prediction	460	488	-	-
	Ssu9g1461	496	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	60	129	IPR014720	-
	Ssu9g1461	496	SUPERFAMILY	dsRNA-binding domain-like	146	199	-	-
	Ssu9g1461	496	PANTHER	RIBONUCLEASE III	50	306	IPR011907	GO:0003723\|GO:0004525\|GO:0006364
	Ssu9g1461	496	MobiDBLite	consensus disorder prediction	1	17	-	-
	Ssu9g1461	496	Gene3D	-	48	133	-	-
	Ssu9g1461	496	Gene3D	-	137	214	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu9g1461	Ssu-Chr9	49888143	49891386	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu9g1461	-		-	gsj:114381825	265.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu9g1461	9	49888143	49891386	Ssu6g2899	6	67022904	67025652	PCT
	Ssu6g2900	6	67046187	67048860	Ssu9g1461	9	49888143	49891386	PCT