Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2900 ATGTTGGCGTACCATAAACAACAATATCAGGCTTTTCTACGAACGACAATGTTCACATTTTTCTCCTTTCGATTCCACTACCCCAACAATACTCTCAACCTCGTCCTTGTTTCTCGCTACCATAAAAGCCTAGTGAGAGAAACTTCTCCTTCTACATTGTCTTGTCACTCTTCCATGGCTTCATCTTCTCCCCAACCTGCTTTTACCCTTCCTGTCCAACCTTTCGCTCAACAATTGATGCACAAAAATCGTTTGCAAGAGTTTGCTCAAAAGTCTAACATTGCACTTCCCGTGTATCAAACTATCAATGAGGGACAACAACATGCTCCGAGCTTTAGGTCAACCGTGTGGGTGGATGGGATGAGTTACGCTTCCCAATCTACTTTTTCCAACCAAAAAACTGCCGAACAGGAAGCTGCTAGACTTGCCTTGAAGTTTCTCTCTAAAAGGACAAGAGATGAAGCCCCATCTCTTGTTTGTAAGATTTCTACATTTTGCAAGTCTATCTTGAATGAATATGCTGCTAAACTGAATCTAGAAGGACCTACTTATGACACTGTTCAGCAAGAAGGCTTGCTTCCTGTATTTATATCTTCTATAGTTTTCAATGGTACAATTTACACTGGTGATGCAGCTAGAAACAGAAAGGATGCCGAGCAGTTAGCTGCTCGTGCTGctattctttcaattttggGTAATTCTGACTCGGGAACAATGCTCTTTGAGATGATTAACTCAAAATCCAAACTTAATGTTGCAATCAAGGGAAATGGCTTGCAAGATATTCATGCTAGTGCTGTGACACCCACGATGAATACAGGACAAACCTATGTTAAATTGGGTCATAAAGATACAGAATTTGCAGGTTCTGTGGCAGATAATAATGATGAATCTAAAGTTGAATTTCAGGAGTCTTCTAGGATGGCTTCCACGTGTCAAGAATTTAAGATACCAAAACAAGAACCATCCCCCGAAGCCACCAAAGTTTCAAATGTGTCCCTACAACAATGTTCAGTTCATCCTATTGATGGTGGTTCAAGTTTGAAAAGGCAGCGAAAGAACTAG 1065 0.4028 MLAYHKQQYQAFLRTTMFTFFSFRFHYPNNTLNLVLVSRYHKSLVRETSPSTLSCHSSMASSSPQPAFTLPVQPFAQQLMHKNRLQEFAQKSNIALPVYQTINEGQQHAPSFRSTVWVDGMSYASQSTFSNQKTAEQEAARLALKFLSKRTRDEAPSLVCKISTFCKSILNEYAAKLNLEGPTYDTVQQEGLLPVFISSIVFNGTIYTGDAARNRKDAEQLAARAAILSILGNSDSGTMLFEMINSKSKLNVAIKGNGLQDIHASAVTPTMNTGQTYVKLGHKDTEFAGSVADNNDESKVEFQESSRMASTCQEFKIPKQEPSPEATKVSNVSLQQCSVHPIDGGSSLKRQRKN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2900 354 MobiDBLite consensus disorder prediction 311 354 - -
Ssu6g2900 354 SUPERFAMILY dsRNA-binding domain-like 166 245 - -
Ssu6g2900 354 PANTHER RIBONUCLEASE III 69 352 IPR011907 GO:0003723|GO:0004525|GO:0006364
Ssu6g2900 354 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 69 352 - -
Ssu6g2900 354 MobiDBLite consensus disorder prediction 324 342 - -
Ssu6g2900 354 Gene3D - 65 153 - -
Ssu6g2900 354 Gene3D - 154 234 - -
Ssu6g2900 354 SMART DRBM_3 81 148 IPR014720 -
Ssu6g2900 354 SMART DRBM_3 166 231 IPR014720 -
Ssu6g2900 354 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 165 232 IPR014720 -
Ssu6g2900 354 SUPERFAMILY dsRNA-binding domain-like 78 149 - -
Ssu6g2900 354 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 80 149 IPR014720 -
Ssu6g2900 354 Pfam Double-stranded RNA binding motif 82 146 IPR014720 -
Ssu6g2900 354 Pfam Double-stranded RNA binding motif 167 227 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2900 Ssu-Chr6 67046187 67048860 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2900 - - aprc:113846998 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2900 6 67046187 67048860 Ssu9g1461 9 49888143 49891386 PCT