Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2899 ATGTACAAAAATCGTTTACAACAGTTTGTGCAAAGGGCTAGCATTGCAGTTCCTGTGTATCAAACTGTTAATGAGGGACCGGTACATGTTCCGAAGTTTAGGTCAACCGTGTGGGTGGGTGAGATGAGTTACACTACACAATCCACATTTTTGCACCGAAAAGCCGCCGAACAGGAAGCGGCTAGACTTGCTTTGGAAAATCTCCTTCAAAAGACCAGAGATGAAGCGGCTTCCCTTGTCAGTGAGATTTCTCCATTTTGCAAGTCTATCATTAATGAATATGCTGCTAAACTGCATGTAGAAAGACCTACATACAACACTGTTCAGCAACATCTAGGAGGGGTGCTTCCTGTTTTTACAACTTCTATAGTTTTCAATGGTACAAGTTACACCGGTGCTGCAGCTAGAACCAAAAAGGAAGCTGAGCAGTCAGCAGTGCATGCTGCTATTCTTTCAATTATGGgTGATTCTAGCTCAGGAACTAAGCTCATTGAGATCATTAAGTCAAAGTCTAAATTTTATGATGCAATCAAAGGAAAGGGCCTATCTCTGTTACAGGATAGGGCAATACAGGAGTTGCAGGCTCTGTGgctgataataataatgaagcTAAAGCTGAATTTCCCAAGTCTTCTAAGACTGCTTTCCACATGTCAAGAAATTCAAACACCAAAACAAGAATCTTCCCCTGAAGCCACCAAGGTGTCTCTGCAACCAGGTTCTACACATTCTATTGATGATGGTTCAAGTTCAAAAAAGCggagaaagaacaaaaagaaggcTAATAAGAAGCCATTGTTGGAACATCCGTTACCGATTGCTACAGCTCCCATGAACCAAGTCCCTCCTTGTTCTGCAGTTCCCATGAACCAAGTCCCCCCTTGTTTTGCAGTTACTTGTTTTGCAGTTCCTATGAACCAGGTCCTTCCTTGTTCTACAGTTCCCATGAACCAAGTCCCCCCTTGTTCTACAGTTCCCATGAACCTAGTTACTCCTTGTTCTACAGTTCCCAAGAACCAAGTCCCTCCTGATTCTGTGGCACGGTAA 1047 0.4164 MYKNRLQQFVQRASIAVPVYQTVNEGPVHVPKFRSTVWVGEMSYTTQSTFLHRKAAEQEAARLALENLLQKTRDEAASLVSEISPFCKSIINEYAAKLHVERPTYNTVQQHLGGVLPVFTTSIVFNGTSYTGAAARTKKEAEQSAVHAAILSIMGDSSSGTKLIEIIKSKSKFYDAIKGKGLSLLQDRAIQELQALWLIIIMKLKLNFPSLLRLLSTCQEIQTPKQESSPEATKVSLQPGSTHSIDDGSSSKKRRKNKKKANKKPLLEHPLPIATAPMNQVPPCSAVPMNQVPPCFAVTCFAVPMNQVLPCSTVPMNQVPPCSTVPMNLVTPCSTVPKNQVPPDSVAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2899 348 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Ssu6g2899 348 SMART DRBM_3 87 154 IPR014720 -
Ssu6g2899 348 SMART DRBM_3 2 69 IPR014720 -
Ssu6g2899 348 PANTHER RIBONUCLEASE III 1 262 IPR011907 GO:0003723|GO:0004525|GO:0006364
Ssu6g2899 348 SUPERFAMILY dsRNA-binding domain-like 2 71 - -
Ssu6g2899 348 SUPERFAMILY dsRNA-binding domain-like 87 159 - -
Ssu6g2899 348 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Ssu6g2899 348 Pfam Double-stranded RNA binding motif 88 147 IPR014720 -
Ssu6g2899 348 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 86 155 IPR014720 -
Ssu6g2899 348 Coils Coil 55 82 - -
Ssu6g2899 348 MobiDBLite consensus disorder prediction 223 274 - -
Ssu6g2899 348 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 1 262 - -
Ssu6g2899 348 Gene3D - 1 68 - -
Ssu6g2899 348 MobiDBLite consensus disorder prediction 223 246 - -
Ssu6g2899 348 Gene3D - 82 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2899 Ssu-Chr6 67022904 67025652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2899 - - gmx:100798730 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1461 9 49888143 49891386 Ssu6g2899 6 67022904 67025652 PCT