Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2471 ATGTCTACCTCCTCCATAAACGGGTGGTGCCTCTCTTCCATCTCCCCAGCCAAAACCTGTCTTAAGAAGGCCACATTGCGCCCTTCAGTCTTTGCAACCCTTAGCACCCCTTCTTctccttcctcttcctcttctttcccTTCTCTCATTCAAGACAGGCCTGTCTTTGCTGCTCCTGCCCCCATCATCACCCCCACTGTGagAGAGGATATGGGGAAGGACTATGAGCAAGCTATTGAAGAGCTCCAGAAGTTGTTGAGGGAGAAGGGTGAACTGAGAGCCACAGCAGCTGAAAGAGTAGAGCAGATAACAGCTTCCCTGGGGACATCATCATCTGATGGCATCCCATCATCAGAAGCGTCAGACAGGATCAAAGCTGGTTTCCTTTACTTCAAGAAGGAGAAATATGACAAGAGTCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAGAGCCCCAAGtttatggTGTTTGCTTGCTCAGACTCAAGAGTGTGTCCGTCTCATGTGCTAGATTTCCAACCAGGAGAGGCCTTTGTGGTCAGAAATGTTGCTAACATGGTCCCACCATATGACCAGTCAAAATACTCTGGAGCTGGGGCAGCCATTGAGTATGCTGTTTTGCATCTCAAGGTTTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTATCTTTCCCATATGATGGAACCTACTCTACTGATTTTATTGAGGAGTGGGTCAAAATTGGCTTACCTGCAAAGGCAAAGGTGAAGTCACAGCATGGGGATGCACCTTTTGCAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCCCTCGGAAACCTGCTGACTTACCCATTTGTTAGAGATGGCTTGGTAAACAAAACATTGGCACTGAAAGGAGGATACTATGACTTTGTTAAGGGATCTTTTGAGCTCTGGGGCCTTCAGTTTGGTCTTGCATCCTCTTTCTCcgtAAAAGATGTGGCCACGATTCTGCATTGGAAGCTATAG 1020 0.4578 MSTSSINGWCLSSISPAKTCLKKATLRPSVFATLSTPSSPSSSSSFPSLIQDRPVFAAPAPIITPTVREDMGKDYEQAIEELQKLLREKGELRATAAERVEQITASLGTSSSDGIPSSEASDRIKAGFLYFKKEKYDKSPALYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQSKYSGAGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPYDGTYSTDFIEEWVKIGLPAKAKVKSQHGDAPFAELCTHCEKEAVNVSLGNLLTYPFVRDGLVNKTLALKGGYYDFVKGSFELWGLQFGLASSFSVKDVATILHWKL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2471 339 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 1 328 - -
Ssu8g2471 339 Pfam Carbonic anhydrase 155 312 IPR001765 GO:0004089|GO:0008270
Ssu8g2471 339 Coils Coil 68 95 - -
Ssu8g2471 339 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 203 223 IPR015892 GO:0004089|GO:0008270|GO:0015976
Ssu8g2471 339 PANTHER CARBONIC ANHYDRASE 1 328 IPR001765 GO:0004089|GO:0008270
Ssu8g2471 339 SUPERFAMILY beta-carbonic anhydrase, cab 121 322 IPR036874 GO:0004089|GO:0008270
Ssu8g2471 339 Gene3D Carbonic anhydrase 108 328 IPR036874 GO:0004089|GO:0008270
Ssu8g2471 339 CDD beta_CA_cladeB 127 316 IPR045066 GO:0004089|GO:0008270
Ssu8g2471 339 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 159 166 IPR015892 GO:0004089|GO:0008270|GO:0015976
Ssu8g2471 339 SMART Pro_CA_2 147 317 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2471 Ssu-Chr8 64119399 64123297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2471 K01673 - gmx:100500448 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2471 8 64119399 64123297 Ssu8g2471 8 64119399 64123297 ECH
Ssu2g1776 2 68480550 68492175 Ssu8g2471 8 64119399 64123297 ECH
Ssu5g1071 5 33843260 33849884 Ssu8g2471 8 64119399 64123297 ECH