Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1071 atggCAGGAGAGACATACGAGGAAGCCATTGCAGCGCTCACGAAGCTTATCAGCGAGAAAGCAGACCTCGGTGATGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTGGAGACCGACGGGTCGAAGGCGTTTAACCCGGTCGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGTGAAATTCCAGAAGAATCCAGTATTATATGGCGAACTTGCCAAGGGCCAGAGTCCAAAGTTTATGGTGTTTGCTTGCTCAGACTCGAGAGTTTGCCCATCCCATGTTCTGGACTTCCAGCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAGCATGGTTCCACCATATGACAAGacGAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCCGCTGTGGTGGTATAAAGGGCCTCATGTCTATCCCAGATGACGGGACCACTGCAAGTGAATTCATAGAGAATTGGGTCCAAATTTGTACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAGCACACTAGAATTCTCGGAGCAGTGTACAAACTGCGAGAAGGAAGCTGTGAATATATCACTTGGGAATCTATTGACTTATCCATTTGTGAGAGATGGGGTTGTGAAGAAAACGCTTGCTTTGAAAGGTGCACATTACGATTTCGTTAAGGGCACATTTGAGCTGTGGGATCTGAACTTCAAAATCTCTTCCTCTGTATCCGTTTAA 771 0.4773 MAGETYEEAIAALTKLISEKADLGDVAAAKIKQLTAELETDGSKAFNPVERIRTGFAHFKNVKFQKNPVLYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNIASMVPPYDKTKYSGTGAAIEYAVLHLKVENIVVIGHSRCGGIKGLMSIPDDGTTASEFIENWVQICTPAKSKVKTEASTLEFSEQCTNCEKEAVNISLGNLLTYPFVRDGVVKKTLALKGAHYDFVKGTFELWDLNFKISSSVSV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1071 256 CDD beta_CA_cladeB 55 244 IPR045066 GO:0004089|GO:0008270
Ssu5g1071 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 131 151 IPR015892 GO:0004089|GO:0008270|GO:0015976
Ssu5g1071 256 Pfam Carbonic anhydrase 83 240 IPR001765 GO:0004089|GO:0008270
Ssu5g1071 256 PANTHER CARBONIC ANHYDRASE 1 256 - -
Ssu5g1071 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 87 94 IPR015892 GO:0004089|GO:0008270|GO:0015976
Ssu5g1071 256 Gene3D Carbonic anhydrase 39 256 IPR036874 GO:0004089|GO:0008270
Ssu5g1071 256 SUPERFAMILY beta-carbonic anhydrase, cab 48 251 IPR036874 GO:0004089|GO:0008270
Ssu5g1071 256 PANTHER CARBONIC ANHYDRASE 1 256 IPR001765 GO:0004089|GO:0008270
Ssu5g1071 256 SMART Pro_CA_2 75 245 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1071 Ssu-Chr5 33843260 33849884 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1071 K01673 - gmx:100808326 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1071 5 33843260 33849884 Ssu5g1071 5 33843260 33849884 ECH
Ssu5g1071 5 33843260 33849884 Ssu8g2471 8 64119399 64123297 ECH
Ssu2g1776 2 68480550 68492175 Ssu5g1071 5 33843260 33849884 PCT