Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2338 ATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAAAAAGCCAgagATCTTCTATTCAAGGACTATCACAGTGACCAGAAGTTCACCATCAGCACCTACTCACCCACTGGAGTtGCTATAACATCCTCAGGGACCAAGAAAGGTGACCATTTTGTAGCTGATGTTAACACCCAGTTGAAGAACAAGAACATCACCACCGATGTCAAAGTGGACACAAGTTCCAATCTTTTCGCAACTATCACTGTTAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAGGTGGAAGTTCAGTACCTGCATGACTATGCTGGAATTAGCACCAGTGTGGGGTTAACAGCAAACCCAATTGTCAACTTCTCTGGCGTTGTAGGAACTAATGTACTTGCCCTTGGTACTGATCTTTCTTTTGACACCAAAATTGGGGAGTTAACTAAATTCAATGCTGGATTGAACTTCACCAAAGACGATTTGATTACCTCATTGACTGTGAATGACAAAGGTGATGCTCTGAATGCTTCATACTACCATGTGGTCAATCACTTGACCAACACTGCTGTTGGTGCTGAGGTAACTCACAGATTCTCAACCAATGAGAACACCCTCACACTTGGCACCCAGCACACATTGGATCCATTGACCACCGTGAAGGCTCGTGTCAACAACTTTGGCAAGGCAAGTGCTCTCATCCAGCACGAGTGGCGTCCCAAATCCTTCTTCACCATTTCTGGGGAGGTTGACACTAAGGCTATTGAGAAGAGTGCAAAGGTTGGATTGGGTTTGGCCCTCAAACCCTAA 831 0.4501 MSKGPGLYSDIGKKARDLLFKDYHSDQKFTISTYSPTGVAITSSGTKKGDHFVADVNTQLKNKNITTDVKVDTSSNLFATITVNEPAPGLKTIFSFRVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNFSGVVGTNVLALGTDLSFDTKIGELTKFNAGLNFTKDDLITSLTVNDKGDALNASYYHVVNHLTNTAVGAEVTHRFSTNENTLTLGTQHTLDPLTTVKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLGLALKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2338 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Ssu8g2338 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu8g2338 276 Gene3D Porin 1 275 IPR023614 -
Ssu8g2338 276 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 276 - -
Ssu8g2338 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu8g2338 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2338 Ssu-Chr8 60888153 60890993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2338 K15040 - gmx:100802449 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2338 8 60888153 60890993 Ssu1g2149 1 61208354 61210418 ECH
Ssu8g2338 8 60888153 60890993 Ssu6g1292 6 20958405 20964998 ECH
Ssu8g2338 8 60888153 60890993 Ssu8g2338 8 60888153 60890993 ECH
Ssu3g0498 3 12431280 12435389 Ssu8g2338 8 60888153 60890993 ECH