Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2149 ATGAGCCAGGGTCCGGgcttatattttgatattggaAAGAAGGCCAGAGATGTTCTTCACAAGGACTATGCTCAACAACCACCAATTCACTTTAACTACAAATCCTTGAATTGGAATTTAGATCTCTCCTGTCAAGAAGAACTTGTGCCTGGACTAAAGGGCCTTTTCAACTGTAACATACCTGACTCTGGGAAGCTGGAACTTCAACACTTTAATAAGTTCAGCGGGTTTACCGGAAGCATTGGATTATTGGGAGACCCAGAAAAAGGATATAACCCTGTTGCAAACATCTCTGGTCTTATAGGAACCAGAATTCTCACCCTGGGAGCTAATCTTGCCTATGACTTATCAGATAGGAGTTATAGGACACCTAACAATCTGAATGCTGGGTTGAGCCTGAACAGTCCCTACCTTGTTGCCGCCGTGACCTTGCATGACAGTTTTCAAACTTTGAAAGGTTCCTGTTATTTTGAAGTGAGCCCCCTGACCAAGACTGCAATTGCAGCAGAGGTGAACTATAACCTTGGAGATGATGAGACTACTGGTGTCACAGTTGGTGCTCAGCATGCATTATTTCCTTGTACATTGCTAAAGGCTCGAATTACCTCCAATGGTAAGGTAGGTGCTCTTATTCGACAAAAGTTGGGGTCGAAATTTTCCATAACTGTGGCAGGAGAGATGAATTTGaatgagaaagataaagaaaagtttCCTAAGGTTGGAGTCTCCATGGCTCTAAAATAA 744 0.4126 MSQGPGLYFDIGKKARDVLHKDYAQQPPIHFNYKSLNWNLDLSCQEELVPGLKGLFNCNIPDSGKLELQHFNKFSGFTGSIGLLGDPEKGYNPVANISGLIGTRILTLGANLAYDLSDRSYRTPNNLNAGLSLNSPYLVAAVTLHDSFQTLKGSCYFEVSPLTKTAIAAEVNYNLGDDETTGVTVGAQHALFPCTLLKARITSNGKVGALIRQKLGSKFSITVAGEMNLNEKDKEKFPKVGVSMALK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2149 247 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 247 - -
Ssu1g2149 247 CDD Porin3_VDAC 5 247 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu1g2149 247 Pfam Eukaryotic porin 39 237 IPR027246 GO:0005741|GO:0055085
Ssu1g2149 247 Gene3D Porin 2 247 IPR023614 -
Ssu1g2149 247 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 247 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2149 Ssu-Chr1 61208354 61210418 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2149 K15040 - gmx:100784432 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2149 1 61208354 61210418 Ssu6g1292 6 20958405 20964998 ECH
Ssu3g0498 3 12431280 12435389 Ssu1g2149 1 61208354 61210418 ECH
Ssu8g2338 8 60888153 60890993 Ssu1g2149 1 61208354 61210418 ECH
Ssu1g2149 1 61208354 61210418 Ssu1g2149 1 61208354 61210418 ECH