Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1292 ATGAGCACCTCTCCGGggatatattttgatattggcAAGAAGGCCAAAGATGTTCTTCACAAGGACTATGCACATCCTTCACCAATTCACTATCACTATCAATTCATGGACTATAATGTAGACCTCTCTTGTCAAGTAGACGAAATTGTACCAGGATTCAGGAGCCTTCTCAAATGCACCATACCTGATTCCGgaaagGTGGAACTACACCACTTGACTAACTACACTGGGATTACTGGATGCATTGGATTAGAAGGAAACCTAGAAAAAGGATATGACCCTGTTGTAAACTTGTCGGGCCTTGTAGGAACAAACATTGTGTCACTTGGAGCCAATGTTGCTTTTGACATACCAACAAGAACAATCAACAAACTGAATGCAGGCTTAGGCCTCAACACTCCCTTCCTTGTTGCTTCCTTGACCATGCATGACAGGTTTGACATTGTGAAAGCCTCCTGTTATCATGAAGTGAACCCCCTAACCAAGACTGCCATTGCAGCAGAGCTGAAGCATAGCTTATCAGTGGGGGAGACTGGTGTCATCATTGGTGCTCAGCATTCATTTTTTCCACAAACGTTGGTAAAGGCTCGACTTGACACCTATGGCAAGGCAGGTGCTCTTATTCAACAAGGGTTGTGGGAGAGATGTTTCATAACTATGGCTGGAGAAGTGGAACTTAAGAACTCAGATAATACTTTGCACCCCAAGGTTGGAGTCTCTGTGGCTTTAAGACCCTAG 738 0.4309 MSTSPGIYFDIGKKAKDVLHKDYAHPSPIHYHYQFMDYNVDLSCQVDEIVPGFRSLLKCTIPDSGKVELHHLTNYTGITGCIGLEGNLEKGYDPVVNLSGLVGTNIVSLGANVAFDIPTRTINKLNAGLGLNTPFLVASLTMHDRFDIVKASCYHEVNPLTKTAIAAELKHSLSVGETGVIIGAQHSFFPQTLVKARLDTYGKAGALIQQGLWERCFITMAGEVELKNSDNTLHPKVGVSVALRP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1292 245 Gene3D Porin 3 244 IPR023614 -
Ssu6g1292 245 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 245 - -
Ssu6g1292 245 CDD Porin3_VDAC 5 244 IPR001925 GO:0005741|GO:0008308|GO:0098656
Ssu6g1292 245 Pfam Eukaryotic porin 37 237 IPR027246 GO:0005741|GO:0055085
Ssu6g1292 245 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 245 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1292 Ssu-Chr6 20958405 20964998 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1292 K15040 - gmx:100787061 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2149 1 61208354 61210418 Ssu6g1292 6 20958405 20964998 ECH
Ssu3g0498 3 12431280 12435389 Ssu6g1292 6 20958405 20964998 ECH
Ssu8g2338 8 60888153 60890993 Ssu6g1292 6 20958405 20964998 ECH
Ssu6g1292 6 20958405 20964998 Ssu6g1292 6 20958405 20964998 ECH