Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0807 ATGTCCACACTAGTTATCATAACCCTGAGTACACCCAATAAAGCCTTAATAAAACCCTTGTTCTTTCTCTATGATTCAATGCACGCATGGTGCACCCTTATGGTGCATGTGCACCCTCTGCAAGAAGTTGGAACCATAGTCTACCAAATAGCTCGTACCTATTGGATAAGAATCGAAGATGTAGTAGACGTGGGTTCTTCACCACAACATGTGTCTGATCCTACCACTATAGATCATCTTGTGTTTGGAATTACTTCAACTGGGACTTCATGGCCTAAGAGGAAGGGTGGTCTACGATCAGCAATCCGTGTGGCACGTGTTGTGAAAGAGATTGTGGCATTGAACTATTCTGGTGTTAGATGGTATGTGTTTGGGGATGATGACACCATTTTCTTCCCTCAGAATCTGGTCAAAACTCTTTCCAAATATGATCATAGGCTTTGGTACTATGTTGGGTCGAGCTCCGAGATTTATGAGGGTGCCCAGGTTTTTGGTTTTGGAATGGCTTTTGGTGGAGGTGGTTTTGCCATCAGTTCCTCCCTAGCAGAAGTCCTAGCCAAGGTTCTTGATTCATGTATACAAAGGTACCCGCATCTTTATGGAAGTGATGCCAGGGTGTACTCTTGCATAACAGAACTAGGTGTGGGATTAACACATGAACCAGGTTTTCATCACGTTGATTTGCGGGGAAATATCTTTGGCCTATTGGCTGCACACCCATTAACTCCCTTGTTGTCCCTACATCACCCAGATTACACTGATCCTATCTTTCCTAACATGACAACTACAAAATCTCTGCAACATTTATTTGAGGCAGTTAATGTTGATTCCGAGAGGATCCTACAACAAACAGTTTGTTATGAAAGGCAGTTTTCATGGACAATTTCTGTGTCGTGGGGCTATGCTGTTCAAGTTTTCCAGAGCAATATGCTTTTGCCAGATGTTCTGAGAGTACAAAAAACATTCGACCAATGGTTGACAGGAAATGTTTTGAAAGGAATATATACTTTCAATATAAGAGAACTTTACCCTGACCCGTGTAAAAGACCCACCATTTTCTATCTCGATAAAGTGTCTTCTGGCAAAGATGGTATCATAAGCAGTTAcaggaaaaattttcaaaattgctCATATAAGGCATCAATGAAGAAATTGGAGGTGATCAAAGTGGTTACAAATAAGTTATACCTTGACAACAAACAGgtaatctatatatattggACACCTAACACCAGAGCAATAATCCTAACCCTGGTTAATATGCAGTCGCTTCACAAAACCACCACAACCCAATCTCTGATAAACTTGCTTTTAGTCTCCTCTTCATTTTGTGCCATTTATATCCTCGTATCAGTGCTACAGTTAGGCACATCACCAAAGCTGGAAAACGTGCATTCTTCATTACAAGATGTGTATGAATCTACTACCACCACCCTAGATCATGTCGTGTTTGGAATTGCTTCAAGTGGGTCTTCATGGCCTAAGAGGAAGGAATACGTCAAGCTCTGGTGGAACAGCAAGCCCAATACAACAATGAGGGGATGTGTATTCGTGGACACCCTCCCACTCTCGGTTGAAGTTAAAGACAATGCTACTCTTCCTCCTCTTTGTGTCTCCGAAGACACTTCTCGGTTTCGCTACACGTGCCGGGGTGGCTTGCGATCAGCAATTCGTGTGGCACGTGTCGTGAAGGAGACAGTGGCCCTGAACCATTCTCATGTTAGATGGTATGTGTTTGGGGATGATGACACGCTTTTCTTCCCTCAGAATGTGGTCAAAACACTTTCCAAGTATGATCACAGGCTTTGGTACTACGTTGGTGCAAACTCCGAGAGTTATAAGCAGAACTGGTTTTTTGGGTTTGGAATGGGCTTTGGTGGGGCCGGTTTTGCTATCAGTTCCTCTCTAGCAAAAGTCCTGACCAAGGTTTTTGATTCATGTATAGAAAGGTATCCGCATCTGTATGGAAGTGATGCCAGGGTGTACTCTTGCATAACAGAACTAGGTGTAGGATTAACACATGAACCCGGTTTTCATCAGGTTGATTTAAGGGGGAATGCCTTTGGTCTATTGGCTGCACATCCAGTAACACCCTTGTTGTCTCTGCATCACCCAGATTACATTGATCCAGTTTTTCCTAACATGACAACTATAAAAGCTCTACAACATTTATTTGAAGCGGCTAATGTTGATCCAGAGAGGATTCTACAACAAACAGTCTGTTATGACAGACGGTTTTCATGGTCAATCTCGGTGTCTTGGGGTTATGCTGTTCAGGTGTTCCAGAACCATATGTCTTTGCCGGATGttctcaaatttcaaaaaacattCAAGCACTGGACCAGAGGAACGGTTTTGGCAGACCTATTTACTTTCAACACAAGAGAGTTTCATCCTGACCCATGTAGAAGGCCCACCATCTTCTATCTTGACAATTTGTCCCGTGGTAAAGATGGCATAATAATAAGCAATTACAGGAAATCTATTCAAAATTGCTCATCCAACGTGGCATCAAAGATACCAGAAGTTATCAGAGTGGCCACAAGTAAGCTAGAGCTTGACATCAGAGAGATATGTTTTGGAGGTGACCCTCTCTTCCATTTCTGTTCAAGTTCTCAGAACTTCACAGCCTATAGTCCCTATGAATCAAACTTGAAAACACTTATCAGCTCGCTTATTTACAAGACACCTTCTACAGGTTTTGGTGTTGGCTCAGTTGGTCAATACCAAAACCAAAAAGCATATGGCCTTGCACTTTGCCGTGGCGATGTGTCAGCGTCAGAATGCAAAACTTGTGTCTCTGATGCAACCAAAGAAATCCTCAGTCGCTGTCCATACAACAAAGGTGGCATCGTATGGTACGACAACTGCATGTTCAAGTATTTGGACACTGATTTCTTTGGCAAGATTGACAACACAAACAAGTTCTCACTGTTGAACGTGCGAAACGTTAGTGATCCTGCCATGTTTAACTACATGACCAAGGAGTTGTTGAGCTTACTTGCCTTTAAGGCTTCTGTGACCCCTAAAATGTATGCAACGGGAGAGCTAAAGATTGGTGGAGAATCAAAGACAATTTATGGGTTAACTCAGTGTACCAGAGACCTTTCTATCAGTAGTTGCAAGAAGTGTCTTGATGATGCAATTATAAGCGGACTTCCAAATTGTTGTGATGGAAAAGAAGGAGGCAGAGTTGTCAGTGGAAGTTGCAACATCCGATATGAGATTTACCCATTTGTCAAAGTATAG 3249 0.4192 MSTLVIITLSTPNKALIKPLFFLYDSMHAWCTLMVHVHPLQEVGTIVYQIARTYWIRIEDVVDVGSSPQHVSDPTTIDHLVFGITSTGTSWPKRKGGLRSAIRVARVVKEIVALNYSGVRWYVFGDDDTIFFPQNLVKTLSKYDHRLWYYVGSSSEIYEGAQVFGFGMAFGGGGFAISSSLAEVLAKVLDSCIQRYPHLYGSDARVYSCITELGVGLTHEPGFHHVDLRGNIFGLLAAHPLTPLLSLHHPDYTDPIFPNMTTTKSLQHLFEAVNVDSERILQQTVCYERQFSWTISVSWGYAVQVFQSNMLLPDVLRVQKTFDQWLTGNVLKGIYTFNIRELYPDPCKRPTIFYLDKVSSGKDGIISSYRKNFQNCSYKASMKKLEVIKVVTNKLYLDNKQVIYIYWTPNTRAIILTLVNMQSLHKTTTTQSLINLLLVSSSFCAIYILVSVLQLGTSPKLENVHSSLQDVYESTTTTLDHVVFGIASSGSSWPKRKEYVKLWWNSKPNTTMRGCVFVDTLPLSVEVKDNATLPPLCVSEDTSRFRYTCRGGLRSAIRVARVVKETVALNHSHVRWYVFGDDDTLFFPQNVVKTLSKYDHRLWYYVGANSESYKQNWFFGFGMGFGGAGFAISSSLAKVLTKVFDSCIERYPHLYGSDARVYSCITELGVGLTHEPGFHQVDLRGNAFGLLAAHPVTPLLSLHHPDYIDPVFPNMTTIKALQHLFEAANVDPERILQQTVCYDRRFSWSISVSWGYAVQVFQNHMSLPDVLKFQKTFKHWTRGTVLADLFTFNTREFHPDPCRRPTIFYLDNLSRGKDGIIISNYRKSIQNCSSNVASKIPEVIRVATSKLELDIREICFGGDPLFHFCSSSQNFTAYSPYESNLKTLISSLIYKTPSTGFGVGSVGQYQNQKAYGLALCRGDVSASECKTCVSDATKEILSRCPYNKGGIVWYDNCMFKYLDTDFFGKIDNTNKFSLLNVRNVSDPAMFNYMTKELLSLLAFKASVTPKMYATGELKIGGESKTIYGLTQCTRDLSISSCKKCLDDAIISGLPNCCDGKEGGRVVSGSCNIRYEIYPFVKV 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0807 1082 Pfam Salt stress response/antifungal 985 1076 IPR002902 -
Ssu8g0807 1082 Pfam Salt stress response/antifungal 869 961 IPR002902 -
Ssu8g0807 1082 Pfam Protein of unknown function, DUF604 615 852 IPR006740 -
Ssu8g0807 1082 Pfam Protein of unknown function, DUF604 163 400 IPR006740 -
Ssu8g0807 1082 ProSiteProfiles Gnk2-homologous domain profile. 972 1079 IPR002902 -
Ssu8g0807 1082 ProSiteProfiles Gnk2-homologous domain profile. 863 966 IPR002902 -
Ssu8g0807 1082 PANTHER FRINGE-RELATED 428 857 - -
Ssu8g0807 1082 PANTHER FRINGE-RELATED 95 402 - -
Ssu8g0807 1082 PANTHER FRINGE-RELATED 59 95 - -
Ssu8g0807 1082 Gene3D - 972 1079 IPR038408 -
Ssu8g0807 1082 Gene3D - 863 966 IPR038408 -
Ssu8g0807 1082 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 428 857 - -
Ssu8g0807 1082 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 95 402 - -
Ssu8g0807 1082 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 59 95 - -
Ssu8g0807 1082 Gene3D - 471 746 - -
Ssu8g0807 1082 Gene3D - 43 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0807 Ssu-Chr8 13283676 13310492 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0807 433 858 Glycosyltransferase AT1G05280 52.995 5.40e-155 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0807 - - gmx:100778878 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0807 8 13283676 13310492 Ssu3g2225 3 72011763 72013701 PCT
Ssu3g2226 3 72016266 72016927 Ssu8g0807 8 13283676 13310492 PCT