Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2226 ATGAACAGAGTACAAGCTTTGCAACATCTTATTGCAGCTGCAAATGCAGATCCTGCCAGGATCCTGCAGCAAACTGTCTGCTATGATCGATCAAATTCTTTGACTTTCTCGGTCTCTTGGGGTTTTGCTATCCAGGTTTATCAAGGAAATGAACTTCTACCTGACCTCCTTTCACTGCAGAGAACTTTTGGGCCATGGAGGAGGGGTAATAAAGTAGAtgctaattttatgtttaacaCCAGAGACTATCCTAGAGATCCTTGTAAAAGGCCTTCtgtatttttcttgaaaagTGTTACATCTGATAAAAGGGGCGTTTGGAGCAATTATAGTAGGCATGTTGTTGGGAACTGCTATGAATCAAATGCTACACAGCTCAAGCAGATCATAGTTTTTTCAAGGAAGCTGGAGCTTAATAATGAAcagATGAATGCCCCCCGTCGTCAGTGCTGCAACGTGTTGCCATCTTCTAATGATACAATCAGTCTTCATATTAGACAGTGTGAAATTGATGAACTGATCTCCATGCAATCATAA 537 0.3892 MNRVQALQHLIAAANADPARILQQTVCYDRSNSLTFSVSWGFAIQVYQGNELLPDLLSLQRTFGPWRRGNKVDANFMFNTRDYPRDPCKRPSVFFLKSVTSDKRGVWSNYSRHVVGNCYESNATQLKQIIVFSRKLELNNEQMNAPRRQCCNVLPSSNDTISLHIRQCEIDELISMQS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2226 178 PANTHER GLYCOSYLTRANSFERASE 1 176 - -
Ssu3g2226 178 PANTHER FRINGE-RELATED 1 176 - -
Ssu3g2226 178 Pfam Protein of unknown function, DUF604 1 151 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2226 Ssu-Chr3 72016266 72016927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2226 2 178 Glycosyltransferase AT4G15240 56.983 5.13e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2226 - - gmx:100813277 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2226 3 72016266 72016927 Ssu8g0807 8 13283676 13310492 PCT