Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2225 ATGAGGCTTTTTCACAAACCCACCAAGGCTCAGGCTCTggttaatttcattttagtctcttcTTCATTCTGTGCCGTTTATCTCATTATATCAGTGCTACTTTTGGGTCCATCAAGGCTAGCACTTGTGAGCAAGACATCGCAAGATGTGTCCACAGCGACCACCCTTGATCACCTTGTGTTTGGAATCGCTTCAAGCACGAGTTCATGGGCCAAGAGGAAGGAGTACGTGAAGCTGTGGTGGAACAACGCCGCCAGCAAAGCAGTGAAGGGGTGCGTGTTTGTGGAAAGCCTCACAGATGAAGAGCATGCCGGGAATGAGAACGACACTTGTCTTCCTCCTCTTTGTGTCTCTCAAGACACTTCGCGGTTTCGTTACACTCACAAGGGTGGACTGCGCTCGGCAATACGCGTGGCGCGTGTTGTTGCGGAGACCGTGGCACTGAACAATGGTTCGGATGTGAGGTGGTATGTGTTTGGAGATGATGACACGGTTTTCTTCCCAGAGAATGTGGCGAAGGCTCTTTCCAAATATGATCACGAGCTTTGGTACTACATTGGTGCGCACTCTGAGGTTTATGAGCAGAACCGGTTGTTTGGTTTTGGGATGGCTTTTGGGGGGGCAGGTTTTGCTATCAGCTCCTCTCTGGCAAAGGTCTTGGCCAAGGTTTTTGATTCTTGCATAGAAAGGTACTCTCATCTCTATGGAAGTGATGGCAGGGTGTACTCTTGCTTGGCAGAACTTGGGGTAGGATTAACACATGAACCCGGTTTTCACCAGGTAGATTTAAGGGGAAATACCTTTGGTCTATTGGCGGCACATCCTTTAACTCCTTTGTTGTCCCTGCATCATCCTGATTACACTGATCCAATCTTTCCAAACATGACAACTACAAAAGCTCTGAAGCATTTATTTGAAGCTGTAAATGTGGATTCCCAGAGGGTGCTACAGCAAGCGATATGCTATGACAGATGGTTTTCATGGACAATTTCAGTGTCATGGGGCTATGCTGTTCAGGTTTTCCCAAACCATATGCTTTTGCCAGATGTTCTGAAGGTGCAAGAGACATTCAAGCAGTGGAGGAAGGGAAACATGTTGGCAAAAACATACACTTTCAACACGAGAGAATTTCACCCTGACCCTTGTAAAAGATCCACCGTTTTCTTTCTAGACAGTGCGTCCTCTGGCAAGGATGGCATCATTAGCAGTTACAAGAAATCTTTTCAAAATTGCTCAAACGATGCCGAGTCGCCAATGAAACTGGAAGTGATCAAAGTGGTCACAAATAAGCTAGACCTTGACATCAAACAGTTGCAGGCTCCAAGAAGACACTGTTGTGATGTGTTGCCCTCTACTGCCCGGGACAAAATGGAAATTGCAATCAGGGAATGCAAAGATGATGAATTGGTTTACATGCACTGA 1422 0.4592 MRLFHKPTKAQALVNFILVSSSFCAVYLIISVLLLGPSRLALVSKTSQDVSTATTLDHLVFGIASSTSSWAKRKEYVKLWWNNAASKAVKGCVFVESLTDEEHAGNENDTCLPPLCVSQDTSRFRYTHKGGLRSAIRVARVVAETVALNNGSDVRWYVFGDDDTVFFPENVAKALSKYDHELWYYIGAHSEVYEQNRLFGFGMAFGGAGFAISSSLAKVLAKVFDSCIERYSHLYGSDGRVYSCLAELGVGLTHEPGFHQVDLRGNTFGLLAAHPLTPLLSLHHPDYTDPIFPNMTTTKALKHLFEAVNVDSQRVLQQAICYDRWFSWTISVSWGYAVQVFPNHMLLPDVLKVQETFKQWRKGNMLAKTYTFNTREFHPDPCKRSTVFFLDSASSGKDGIISSYKKSFQNCSNDAESPMKLEVIKVVTNKLDLDIKQLQAPRRHCCDVLPSTARDKMEIAIRECKDDELVYMH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2225 473 Pfam Protein of unknown function, DUF604 195 446 IPR006740 -
Ssu3g2225 473 Gene3D - 46 312 - -
Ssu3g2225 473 PANTHER FRINGE-RELATED 9 471 - -
Ssu3g2225 473 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 9 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2225 Ssu-Chr3 72011763 72013701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2225 13 438 Glycosyltransferase AT1G05280 54.091 6.52e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2225 - - gmx:100813816 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2225 3 72011763 72013701 Ssu3g2225 3 72011763 72013701 ECH
Ssu8g0807 8 13283676 13310492 Ssu3g2225 3 72011763 72013701 PCT