Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0786 ATGGCCTCTTCTGCCTCTTCGCTCCTCCGAGCTTCCAGGTCCAAGCTTGTTTCCTCTTCCTCCGCTTCTCTTTCTAGAACCTTCGCTCGCTCCTCTCCTCGCCGATCCCTCGGCTCCTCCTCCGCCGCGCGCTCCTTCGGCTCCGCCGTCCCCCGATGGAGCCACGGCGTCGATTGGAGGTCTCCGCTCGGCCTCCGCCCTCAGATCAGAGCCCTCGCTCCCCTCCTCGAACGCTTCCACCGCAGGATCGCCACTTCTGCTTGCGAGAATCCTTTCAAGGGAAACTTGACTAGTCTCCCTAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTTCCGTCGCTCAACGATCCGAGAATTGATAGGTTACCGTACTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTACTAAGGAAGATGTTGAGAAGATTATTGACTGGGAAAACTCTTTTGTGAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTCTACTGCAGGATTTTACTGGAGTCCCAGCTGTTGTCGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAAATGCTTTCCGTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGTGTTGTTTTCAACAATGAGGGCTTGCTCTATCCTGATAGTGTGGTTGGGACTGATTCACATACAACAATGATAGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAACTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGCGACACAAATGCTTAGGAAACATGGTGTTGTAGggaaatttgttgaattttatggtGATGGTATGGGTGAGTTATCATTAGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGATCACGTTACATTACAATACCTTAAATTAACTGGAAGAAGTGATGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTGTTGACTATAATGAGCCTCAACCGGACAGAGTTTATTCATCCTATCTCGAATTGAACCTTGACGAAGTTGAACCATGCATCGCGGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTCGACAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGATGTACAAGGCAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCGGAGCTCAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTAGCAAAGAAGGCTCACGAGCTAGGTTTGCAGGTTAAGCCATGGGTAAAAACAAGTCTTGCTCCTGGCTCTGGAGTTGTTACAAAATATCTACGTCAGAGTGGCCTGCAAAAGTATCTAAATGAACAGGGTTTCAATATTGTTGGATTTGGCTGTACCACATGTATTGGCAATTCAGGGGAACTGGACCAATCAGTTGCTTCTGCTATCtctgaaaatgACATTGTAGCTGCTGCTGTGCTGTCTGGGAACCGCAATTTTGAGGGCCGTGTGCATCCCTTGACAAGAGCTAACTACCTTGCCTCACCACCTCTAGTTGTTGCTTATGCTCTCGCTGGCACAGTTGACATTGACTTTGAAAAGGAGCCAATAGGGACAGGGAAGGATGGAAAGAATATTTACTTGAGGGATATTTGGCCATCCACTCAAGAAATTGCAGAGGCTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAAGGCAACGCTATGTGGAACCAACTACAAGTTCCTGCTGAGACCCTGTACTCATGGGACCCTAAGTCGACATATATTCATGAACCTCCATACTTCAAGGACATGACCATGGATCCTCCTGGAGCTCATGGTGTGAAAGATGCCTATTGTCTGCTGAATTTTGGTGACAGTATAACGACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAATACCTTATGGAGCGAGGGGTGGAACAAAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAGTGATGGCAAGGGGAACTTTTGCCAACATTCGTCTCGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAGACAGTCCACATTCCGACTGGGGAGAAGCTTTACGTGTTTGATGCAGCACAGAGATACAAGGCTGCAGGGCAGGACACCGTTGTGCTGGCTGGAGCTGAATATGGTAGTGGAAGTTCCAGAGATTGGGCCGCCAAGGGTCCCATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGTAGTAATTTAGTAGGAATGGGTATTATTCCTCTTTGCTTTAAATCTGGTGAGGACGCTGACACATTGGGATTGACTGGTCACGAACGCTATACTATTGACCTCCCAAGTAAAATCAGCGAGATAAGGCCTGGCCAAGATGTCACGTGTAACTACTAA 2841 0.4643 MASSASSLLRASRSKLVSSSSASLSRTFARSSPRRSLGSSSAARSFGSAVPRWSHGVDWRSPLGLRPQIRALAPLLERFHRRIATSACENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENSFVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTATQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFVDYNEPQPDRVYSSYLELNLDEVEPCIAGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKDVQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLRQSGLQKYLNEQGFNIVGFGCTTCIGNSGELDQSVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNIYLRDIWPSTQEIAEAVQSSVLPDMFRSTYEAITKGNAMWNQLQVPAETLYSWDPKSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLMERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAQRYKAAGQDTVVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSKISEIRPGQDVTCNY 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0786 946 Gene3D Aconitase, domain 3 458 681 IPR015931 -
Ssu8g0786 946 SUPERFAMILY LeuD/IlvD-like 722 934 - -
Ssu8g0786 946 PANTHER ACONITATE HYDRATASE 55 944 - -
Ssu8g0786 946 Pfam Aconitase C-terminal domain 782 909 IPR000573 -
Ssu8g0786 946 TIGRFAM aconitase_1: aconitate hydratase 1 108 945 IPR006249 -
Ssu8g0786 946 CDD AcnA_IRP 171 655 - -
Ssu8g0786 946 SUPERFAMILY Aconitase iron-sulfur domain 104 718 IPR036008 -
Ssu8g0786 946 Gene3D Aconitase, domain 4 746 946 IPR015928 -
Ssu8g0786 946 Gene3D Aconitase, domain 3 89 457 IPR015931 -
Ssu8g0786 946 PRINTS Aconitase family signature 522 533 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 584 597 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 232 245 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 285 298 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 361 374 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 299 314 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 375 388 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 457 471 IPR001030 -
Ssu8g0786 946 PRINTS Aconitase family signature 256 264 IPR001030 -
Ssu8g0786 946 CDD AcnA_IRP_Swivel 759 929 IPR044137 -
Ssu8g0786 946 ProSitePatterns Aconitase family signature 1. 518 534 IPR018136 -
Ssu8g0786 946 Gene3D - 682 743 - -
Ssu8g0786 946 ProSitePatterns Aconitase family signature 2. 584 597 IPR018136 -
Ssu8g0786 946 Pfam Aconitase family (aconitate hydratase) 150 653 IPR001030 -
Ssu8g0786 946 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 944 IPR006249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0786 Ssu-Chr8 12931138 12939167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0786 K01681 - gmx:100810088 1774.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0786 8 12931138 12939167 Ssu8g0786 8 12931138 12939167 ECH
Ssu8g0786 8 12931138 12939167 Ssu3g2251 3 72441095 72442216 PCT
Ssu3g2252 3 72442353 72450856 Ssu8g0786 8 12931138 12939167 PCT