Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2252 ATGTATATAACGGCCTCTTCCTCTGCCTCTTCGCTCCTCAGAGCCACCAGGCCCAAActcttctctccctctccttCTTCTGTTTCTAGAACCTTCGTTTATCCTCCTTCGTTCGCTCCCTACTCTTCCCGCAGCTCCGTCTCCGCCGCGACGCGATCCTTCCGCTCCTCCGTTCCACGGTGGAGCCACCGCCTCCATTGCGCCTCTCCGCTCACTCTTCGCTCTCAGATCAGAGCCGCCCCTCCCGTCGTCGAACGCTTCCACCGCAAGATCGCTACAATGGCTAATGAAAATCCTTTCAAGGGAAACTTGACGAGTCTCCCCAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTATAGTCTTCCTTCTCTCAATGATCCGAGAATTGACAGGTTACCATACTCCATCAGAATTCTCCTTGAATCTGCCATTcgtaattgtgacaattttcaAGTCAAAAAAGAAGATGTTGAGAAGATTCTGGACTGGGAAAACACTTCTACAAAGCAAGTTGAGATTCCTTTCAAGCCCGCTCGTGTTCTCCTGCAGGATTTTACTGGAGTCCCGGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATCAACCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTTGCAAGGTCAGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCATAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATACCTTGGAAGGGTTGTATTCAACAATGAGGGCCTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGAGTTGGAGGTATTGAAGCTGAGGCAGCAATGCTTGGTCAGCCTATGAGCATGGTTTTGCCTGGTGTTGTTGGGTTCAAGTTAACTGGACAACTATGCAATGGTGTTACAGCAACAGACTTGGTTCTAACTGTGACTCAAATTCTCAGAAAGCATGGTGTTGTGGggaaatttgttgaattttatgGTGATGGAATGGGTGAATTATCTTTGGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACATTACAATATCTCAAGTTAACCGGAAGAAGTGATGAGACTGTGGCCATGGTAGAGTCTTATCTAAGGGCAAACAAACTGTTTGTTGACTATAATGAGCCACAACAAGACAGAGTGTATTCATCGTATCTTGAATTAAACCTTTCCAATGTTGAACCATGTATGTCAGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAGGCTCAAGGAAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCGGAGCTTAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCTCATGAGCTAGGTTTGCAGGTGAAGCCTTGGGTTAAAACAAGTCTTGCCCCAGGTTCTGGAGTTGTTACAAAATATCTACTCCAGAGTGGACTGcaaaaatatctaaatgaaCAAGGTTTTCATATTGTTGGATTTGGCTGTACTACATGTATTGGCAATTCAGGAGAGCTGGATGAATCCGTTGCTTCTGCCATCTCAGAAAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGAGTGCATCCATTGACAAGAGCTAACTACCTTGCCTCTCCTCCTCTAGTTGTTGCTTATGCCCTTGCTGGCACGGTTGACATTGACTTTGAGAAGGAGCCAATTGGGACAGGGAAGGATGGAAAGAATGTCTACTTGAGGGATATCTGGCCATCTACTGAAGAAATAGCTGAGGTTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAGGCTATTACCAAAGGGAACCCCATGTGGAATCAACTACAAGTTCCTGCTGAGACTCTCTACTCATGGGACCCCAACTCAACATATATCCATGAACCCCCATACTTCAAGAACATGACCATGGATCCTCCTGGTGCTCATGGTGTAAAAGATGCTTATTGCCTGCTGAATTTTAGGTGA 2310 0.4459 MYITASSSASSLLRATRPKLFSPSPSSVSRTFVYPPSFAPYSSRSSVSAATRSFRSSVPRWSHRLHCASPLTLRSQIRAAPPVVERFHRKIATMANENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKILDWENTSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFHNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGQLCNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVESYLRANKLFVDYNEPQQDRVYSSYLELNLSNVEPCMSGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIAEVVQSSVLPDMFRSTYEAITKGNPMWNQLQVPAETLYSWDPNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2252 769 Gene3D - 690 751 - -
Ssu3g2252 769 Gene3D Aconitase, domain 3 466 689 IPR015931 -
Ssu3g2252 769 PANTHER ACONITATE HYDRATASE 53 768 - -
Ssu3g2252 769 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 53 768 IPR006249 -
Ssu3g2252 769 SUPERFAMILY Aconitase iron-sulfur domain 112 726 IPR036008 -
Ssu3g2252 769 TIGRFAM aconitase_1: aconitate hydratase 1 116 768 IPR006249 -
Ssu3g2252 769 Gene3D Aconitase, domain 3 97 465 IPR015931 -
Ssu3g2252 769 ProSitePatterns Aconitase family signature 2. 592 605 IPR018136 -
Ssu3g2252 769 CDD AcnA_IRP 179 663 - -
Ssu3g2252 769 PRINTS Aconitase family signature 264 272 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 383 396 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 465 479 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 240 253 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 293 306 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 530 541 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 592 605 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 369 382 IPR001030 -
Ssu3g2252 769 PRINTS Aconitase family signature 307 322 IPR001030 -
Ssu3g2252 769 Pfam Aconitase family (aconitate hydratase) 158 661 IPR001030 -
Ssu3g2252 769 ProSitePatterns Aconitase family signature 1. 526 542 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2252 Ssu-Chr3 72442353 72450856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2252 K01681 - gmx:100793264 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2252 3 72442353 72450856 Ssu3g2252 3 72442353 72450856 ECH
Ssu3g2252 3 72442353 72450856 Ssu8g0786 8 12931138 12939167 PCT