Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0479 ATGGCAACGGATTCTTCTATTGGTAATGGACATCACCAGACAACAACAAAGCAACCTCCTTTGCCATCTCCCCTGCgcttttccaaattttttcaGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATtgatggaaaatgaaaaaaatgagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACAGCGCCTTTTTTGATAGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTGAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCAAAGCGAGTAGGAGCAAgGATTTTGCTTACATCAACTTCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAGAGTTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCTGAGACTTTGATGTTTGATTACCATAGGCAGCATGGGCTTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGACGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGGGGAGAACCCTTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTTTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGAAGGGCCACACACTGGACCAATCAACCTTGGAAATCCAGGTGAATTTACGATGACTGAACTTGCTGAGACAGTGAAAGAGCTTATTAATCCAAGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCACGACAAAGAAAACCAGACATAACAAAAGCGAAGGAATTGTTGGGCTGGGAGCCGAAGGTCAAGTTGCGGGATGGTCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGGGTTGGCAAAAAGAGTTAA 1047 0.4327 MATDSSIGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTAPFLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCYVSDLVDGLIRLMEGPHTGPINLGNPGEFTMTELAETVKELINPSVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVGKKS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0479 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 339 IPR036291 -
Ssu8g0479 348 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 347 - -
Ssu8g0479 348 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 347 IPR044516 GO:0042732|GO:0048040|GO:0070403
Ssu8g0479 348 Pfam GDP-mannose 4,6 dehydratase 38 332 IPR016040 -
Ssu8g0479 348 CDD UGD_SDR_e 35 339 - -
Ssu8g0479 348 Gene3D - 34 341 - -
Ssu8g0479 348 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0479 Ssu-Chr8 7519796 7523948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0479 32 331 Miscellaneous Gene Families AT1G02000 24.633 7.70e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0479 K08678 - gmx:100790835 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0479 8 7519796 7523948 Ssu3g2612 3 79612819 79616316 PCT
Ssu3g2613 3 79621633 79625301 Ssu8g0479 8 7519796 7523948 PCT