Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2613 ATGGCAACGAATTCTTCTAATGGAGACAGTCAAAAAGCAACGAAGCAACCTCCCATGCCATCTCCCTTGCGTTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGCGCTGGATTTATTGGTTCTCACCTAGTTGACAGATtgatggaaaatgaaaaaaatgagGTCATTGTTGTTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGATGTGACAGAGCAATTGTTGATTGAAGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACAAATGTGATTGGAACGCTGAACATGCTTGGCCTTGCTAAGCGTGTGGGGGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATTGaGATACGCATTGCGAGAATCTTTAACACATACGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTGAATTTACAATGATTGAACTTGCGGAGAATGTGAAAGAGCTTATTAATCCAGCAGTGGAGATAAAGATGGTTGAGAACACTCCTGATGATCCTCGTCAGAGAAAGCCAGACATAACAAAAGCAAAGGAATTGCTGGGCTGGGAACCAAAGGTCAAGTTGCGCGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCAGAGGCTTGGGGTTCCCAAGAACAACTAA 1041 0.4217 MATNSSNGDSQKATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVVDNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPAVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVPKNN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2613 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 340 IPR036291 -
Ssu3g2613 346 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 346 IPR044516 GO:0042732|GO:0048040|GO:0070403
Ssu3g2613 346 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Ssu3g2613 346 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 346 - -
Ssu3g2613 346 Gene3D - 32 341 - -
Ssu3g2613 346 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g2613 346 CDD UGD_SDR_e 33 337 - -
Ssu3g2613 346 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2613 Ssu-Chr3 79621633 79625301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2613 35 329 Miscellaneous Gene Families AT4G00110 23.939 3.95e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2613 K08678 - gmx:100819843 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2613 3 79621633 79625301 Ssu3g2613 3 79621633 79625301 ECH
Ssu3g2613 3 79621633 79625301 Ssu8g0479 8 7519796 7523948 PCT