Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2612 ATGGCAGCGAATTCTTCTAATGGAGATCACCATACATCAAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTCCAAATTCTTTCAGTCTAACATGAGAATCTTGGTTACGGGAGGAGCTGGATTCATTGGTTCTCACCTAGTTGATAGATtgatggaaaatgaaaaaaatgagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCCTGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGaCAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGAATTTTACTTACATCAACATCGGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGTGTTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGCTTCgTGGTGAACCCTTGACGGTCCAGTCTCCGGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTTGATGGCCTTATCCGTCTCATGGAAGGATCGGACACTGGACCAATCAACCTTGGAAACCCAGGTGAATTTACGATGCTTGAACTTGCTCAGACGGTGAAGGAGCTTATTAAACCAGATGTGGAGATAAAGACTGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCGGACATTACAAAAGCACAGGAATTGCTTGGCTGGGAACCAAAGGTCAAGCTGCGAGATGGGCTTCCTTTTATGGAAGAGGATTTCCGTTTGAGGCTTggagttaacaaaaaaaattaa 1038 0.4268 MAANSSNGDHHTSKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLTIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMLELAQTVKELIKPDVEIKTVENTPDDPRQRKPDITKAQELLGWEPKVKLRDGLPFMEEDFRLRLGVNKKN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2612 345 CDD UGD_SDR_e 32 336 - -
Ssu3g2612 345 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 345 - -
Ssu3g2612 345 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2612 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 345 IPR044516 GO:0042732|GO:0048040|GO:0070403
Ssu3g2612 345 Pfam GDP-mannose 4,6 dehydratase 35 328 IPR016040 -
Ssu3g2612 345 Gene3D - 31 338 - -
Ssu3g2612 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 336 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2612 Ssu-Chr3 79612819 79616316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2612 29 344 Miscellaneous Gene Families AT1G02000 24.217 2.01e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2612 K08678 - gmx:100790835 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2612 3 79612819 79616316 Ssu3g2612 3 79612819 79616316 ECH
Ssu8g0479 8 7519796 7523948 Ssu3g2612 3 79612819 79616316 PCT