Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0404 ATGTCACATTATCATTTGACGCCAAAGGATGACCACGTTTGGGCTGATTTGCTACCTAGGAAGTTGTTGAAAGAGGAAAACCAACATGATTGGGATATGATGTTCAGGAAAATTAAGAAAGTGGATGTGTTGAAGCCACCCCAACAACGCCAAAGTTTTCTGAAACAAGTGTCTCTGCATGATGTGAGATTGCATGAAGGTTTAATCCATGCTCGGGCACAACATACAAACTTAGAGTATCTGTTGATGTTGGATGTGGACAGACTTCTTAATTACAAGGGAATAAGAAGAAAGGGCTATGAGAAACCATTGAAAGCGTAA 321 0.4019 MSHYHLTPKDDHVWADLLPRKLLKEENQHDWDMMFRKIKKVDVLKPPQQRQSFLKQVSLHDVRLHEGLIHARAQHTNLEYLLMLDVDRLLNYKGIRRKGYEKPLKA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0404 106 PANTHER PROLINE-TRNA LIGASE (DUF1680) 3 90 - -
Ssu8g0404 106 PANTHER - 3 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0404 Ssu-Chr8 6495216 6495739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0404 K09955 - gmx:100781521 124.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0404 8 6495216 6495739 Ssu8g0404 8 6495216 6495739 ECH
Ssu8g0404 8 6495216 6495739 Ssu3g2705 3 80970761 80978305 PCT
Ssu3g2706 3 80990136 80997194 Ssu8g0404 8 6495216 6495739 PCT