Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2706 ATGGAGGCTTTGGTGTTTGTGTTTGTGGCCCTTTCGTTGTGCGGTTGTGCTGCTGCTAAAGAGTGCACAAACTTTCCTACACTATCATCACACACGCTCAGGTACGAGCTATTGAAATCCAAGAATGAAATGCGAAAGGAAGAGGAATTGTCACACTACCATTTGACGCCAACGGATGAATCTGCTTGGGATGATTTGCTGCCGAGGAAGTCCTTGACAGAACAACACCAACATGATTGGGGGGAGATGTATAGGAAAATTAAGAACATGGGTGTGTTCAAGTCACCTGAAGGGTTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCATAAGGATTCCATCCATGGTAGAGCACAGCAGACAAACTTGGAGTATCTGTTGATGTTAGATGTGGACAACTTGCTTTGGAGCTTCAGGAAGACAGCTGGTCTACCCACTCCTGGGACTCCTTATGGAGGGTGGGAAGGCCCAGAAGTTGAGCTCCGGGGTCATTTTGTTGGGCATTACCTGAGCGCATCAGCTCTAACATGGGCCAGCACACTAAATGATAGCCTGAAACAGAAAATGTCATCTCTTGTTGATGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACTGGATATCTATCTGCATTTCCATCTGAGTTTTTTGATCGATTTGAAGCTGTTCAAGAAGTTTGGGCTCCATATTATACCATTCACAAGATCTTGGCCGGCCTCTTGGATCAACATACTTTTGTTGGAAATCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCTGAACGTAATAACAAAGTACACTATACATAGACACTATGAATCACAGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCATAACAGGAGATTCTAAGCATCTATTGTTGGCTCACCTTTTTGACAAGCCGTGCTTTCTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTTCATGTTAATACACATATCCCAATTGTTGTTGGAGCTCAAATGCGAGGAAGGAAAGATCCTACACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAATTTTGCTCAATCAGACAGTTGTTCCAGTTGCTTCATGGGATCCTTACCTACGAGTGACATTTACATTTTCTCCTGTTGAGGAAACTTTTTGTCAATCACAAGACGATGGAGTGCTAGTGACAATGCTGACCCTTCATCTGCCAATTACTGTAAGAACAGAGAACATAAAAGATGACAGGCCTGAATATGCATCTATTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCCGGTCATACCAGCGGTGGTGATTGGGACCTTAAAGCTGGGGCTAACAATTCAGACTGGATTACTCCTATTCCTGCCAGTTACAATAGTCAACTAGTTTCTTTTTCCCAAGACTCTGAAGATTCAACTTTTGTTTTGGCAAATTCAAACCAATCACTTGCAATGCTAAACTTGCCTGAATCTGGCACTGATTTGGCTCTTCAGGCAACCTTTAGGCTTGTCCTACAAGAATCTTTCTCAAAGTTTTCAATATTGGCAGAATCTAGTGGTAGATCAGTGATATTAGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGAGCAGACAAACCTCTTCTCATTGTAGATTCTTCCCGTGGTGGGCCATCTTCTGTTTTTCTTGCGATACCGGGATTGGATGGACAAAGTGAAACCATATCTTTAGAATCCCAAAGCAATAAGGGCTGTTACGTGTATAGTGGTATGGGCTCTAGTGCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATGCTACTTTTAACCAAGCAGCAAGCTTTGTTACTCGGAAAGGATTGAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGAGCAAACAGGAATTTTCTTTTGGAGCCATTACTCTCATTCAGAGATGAGCATTATACAGTTTATTTCAATATTCAAGGTTGA 2016 0.4191 MEALVFVFVALSLCGCAAAKECTNFPTLSSHTLRYELLKSKNEMRKEEELSHYHLTPTDESAWDDLLPRKSLTEQHQHDWGEMYRKIKNMGVFKSPEGFLKEVPLQDVRLHKDSIHGRAQQTNLEYLLMLDVDNLLWSFRKTAGLPTPGTPYGGWEGPEVELRGHFVGHYLSASALTWASTLNDSLKQKMSSLVDGLSACQEKIGTGYLSAFPSEFFDRFEAVQEVWAPYYTIHKILAGLLDQHTFVGNPQALKMVTWMVDYFYNRVLNVITKYTIHRHYESQNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHVNTHIPIVVGAQMRGRKDPTLYIIQYISSSFNWKSGKILLNQTVVPVASWDPYLRVTFTFSPVEETFCQSQDDGVLVTMLTLHLPITVRTENIKDDRPEYASIQAILYGPYLLAGHTSGGDWDLKAGANNSDWITPIPASYNSQLVSFSQDSEDSTFVLANSNQSLAMLNLPESGTDLALQATFRLVLQESFSKFSILAESSGRSVILEPFDLPGMNVIHQGADKPLLIVDSSRGGPSSVFLAIPGLDGQSETISLESQSNKGCYVYSGMGSSAGVKLSCKSDSDATFNQAASFVTRKGLSQYNPISFVAKGANRNFLLEPLLSFRDEHYTVYFNIQG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2706 671 PANTHER - 412 670 - -
Ssu3g2706 671 PANTHER - 351 403 - -
Ssu3g2706 671 PANTHER - 9 347 - -
Ssu3g2706 671 Pfam Beta-L-arabinofuranosidase, GH127 108 345 IPR012878 -
Ssu3g2706 671 PANTHER PROLINE-TRNA LIGASE (DUF1680) 351 403 - -
Ssu3g2706 671 PANTHER PROLINE-TRNA LIGASE (DUF1680) 412 670 - -
Ssu3g2706 671 PANTHER PROLINE-TRNA LIGASE (DUF1680) 9 347 - -
Ssu3g2706 671 SUPERFAMILY AbfB domain 538 652 IPR036195 GO:0046373|GO:0046556
Ssu3g2706 671 Gene3D - 532 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2706 Ssu-Chr3 80990136 80997194 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2706 K09955 - qsu:111996869 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2706 3 80990136 80997194 Ssu8g0404 8 6495216 6495739 PCT