Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2705 ATGGATAAGGAGAAACTGCACTGCAATCTCCTTTGTTTTCTAGAGCCTATATATATTCCCCCTCACATGCCTTATGCCTATGTTGACTTAACTATTTCCCTCATTTCAGAAATCCaagCTGCTATGCTTGGTTTAAgGAGTATGGAGgcttttgtgtttgtgtttgtggcACTTGTGTTGTGTGGTTGTGCTGCTGGTAAAGAGTGCACAAACACTCCTCCACAATCATCACACACGCTCAGGTACGAGCTATTGACATCCAGGAATGAAACGTGGAAGGCAGAGGTGTTGTCTCACTTCCATCTGACACCAACAGATGAATCTGCTTGGGCAGATTTGCTGCCGAGGAAGTTCTTGTCAGAACAACGCCAACATGATTGGACAGTGATGTATAGGAAAATTAAGAACATGGGTGTGTTCAAGTCACCTGAAGGCTTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCATAAGGATTCCATCCATGGTAGAGCACAGCAGACAAACTTGGAGTATCTGTTGATGTTAGATGTGGACAACTTGCTGTGGAGCTTTAGGAAGACGGCTGCTCTATCCACTCCTGGGACTCCTTATGGAGGGTGGGAAGATCCACAAATGGAGCTCCGGGGTCATTTTGTTGGGCATTACTTGAGCGCATCAGCTTTAATGTGGGCCAGCACACAGAATGATAGCGTGAAACAGAAAATGTCATCTCTTGTTGCTGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACTGGATACCTATCTGCATTTCCATCTGAGTTTTTTGATCGATTTGAAGCTGTTCAATATGTTTGGGCTCCATATTATACCATTCACAAGATCTTGGCTGGCCTCTTGGATCAACATACTTTTGCTGGAAACTCTCAAGCTCTAAAAATGGTAATATGGATGGTTGATTACTTCTACAACAGAGTGCTAAATGTAATAACAAAGTACACTATAAATAGACACTATGATTCACAGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCATAACGGGAGATTCTAAGCATCTATTGTTGGCTCATCTTTTTGATAAACCATGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAATTATTGTTGGATCTCAAAGGCGGTATGAAATCATAGGCGATCCACTTTATAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGGGAAAGATCCTACACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAATTTTGCTCAATCAGACAGTTGTTCCAGCTGCTTCATGGGATCCTTACCTACGAGTGACATTTACATTTTCTCCTGTTGAGGCTCTGGATCCTGGCATTGTCACCAAATGCTTGTGGAGTGGAGCAGCCATTTTGCCAAAGAAATTGCTTTCATAA 1464 0.4126 MDKEKLHCNLLCFLEPIYIPPHMPYAYVDLTISLISEIQAAMLGLRSMEAFVFVFVALVLCGCAAGKECTNTPPQSSHTLRYELLTSRNETWKAEVLSHFHLTPTDESAWADLLPRKFLSEQRQHDWTVMYRKIKNMGVFKSPEGFLKEVPLQDVRLHKDSIHGRAQQTNLEYLLMLDVDNLLWSFRKTAALSTPGTPYGGWEDPQMELRGHFVGHYLSASALMWASTQNDSVKQKMSSLVAGLSACQEKIGTGYLSAFPSEFFDRFEAVQYVWAPYYTIHKILAGLLDQHTFAGNSQALKMVIWMVDYFYNRVLNVITKYTINRHYDSQNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPIIVGSQRRYEIIGDPLYKLGDSIYFEEEGKDPTLYIIQYISSSFNWKSGKILLNQTVVPAASWDPYLRVTFTFSPVEALDPGIVTKCLWSGAAILPKKLLS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2705 487 Pfam Beta-L-arabinofuranosidase, GH127 155 403 IPR012878 -
Ssu3g2705 487 PANTHER PROLINE-TRNA LIGASE (DUF1680) 54 404 - -
Ssu3g2705 487 PANTHER PROLINE-TRNA LIGASE (DUF1680) 404 461 - -
Ssu3g2705 487 PANTHER - 54 404 - -
Ssu3g2705 487 PANTHER - 404 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2705 Ssu-Chr3 80970761 80978305 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2705 K09955 - gmx:100783150 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2705 3 80970761 80978305 Ssu3g2705 3 80970761 80978305 ECH
Ssu8g0404 8 6495216 6495739 Ssu3g2705 3 80970761 80978305 PCT