Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0403 ATGAGTTGCGTTAGGTCCATAACAGTGGTGGTGTTACTAATGGCCCTGAGCTCCGGCGTGCGGCCGTGTCCGCCGTCGGACAGGGCGGCGCTGCTGGCGTTCAAGGCAGCGCTCCACGAACCCTACCTCGGAATCTTCGGCTCGTGGACCGGCGCCGACTGCTGCCACAAGTGGTACGGCGTGAGCTGCGACCAGGAGACCCGCCGCGTCGCCGACATCAACCTCCGCGGCGAGTCGGAGGAGCCGATCTTCGAAAAAGCCCACCGCACCGGCTACATGACCGGCTACATCTCGCCGGCGATCTGCAAGCTCGCGCGTCTCTCCAGCGTCACCATCGCCGACTGGAAGGGAATCTCCGGCGAGATCCCGCGCTGCATCACCACCCTGCCTTTCCTCCGCATCATCGACCTCATCGGAAACCGCATCTCCGGCACCATTCCCTCCGACATCGGCCGGCTCCACCGCCTCACCGTGCTCAACGTCGCCGACAACTTAATCTCCGGCACGATCCCCGCTTCTCTCACGAACCTCACGAGTCTCATGCACCTGGACCTCCGCAACAACCACATCTCCGGGCCCATTTCGAGGAACTTCGGCAGGCTTCGAATGCTGAGCCGGGCCCTGCTGAGCGGAAACCTGCTTAGCGGGCCCATCCCGGGCTCGGTTTCGCAGATTTATCGTCTCGCGGATCTGGATCTGTCTCGCAACCAGATTTCTGGGCCCATTCCGGAGTCGCTGGGTAAAATGGCGGTTCTCTCGACGCTGAATTTGGACATGAACAAACTCTCTGGGCCCATTCCGGTGAGCCTTTTTAGTTCGGGAATCAGTGACTTGAACTTGAGCCGGAACGCCTTGGAGGGGAACATACCCGACGCGTTCGGCGTGAGGTCTTATTTCACGGTTCTGGATTTGTCGTATAATAACCTGAAAGGGCCCATACCCAAGTCCATATCCTCTGCTTCGTATATTGGACACTTGGATTTGAGTCACAACCATCTCTGTGGCAAGATTCCCGTTGGGTCTCCTTTCGATCATCTAGAAGCGTCGTCGTTTGTGTACAACGATTGTCTCTGCGGGAAACCACTCAAACCTTGCTAG 1098 0.5865 MSCVRSITVVVLLMALSSGVRPCPPSDRAALLAFKAALHEPYLGIFGSWTGADCCHKWYGVSCDQETRRVADINLRGESEEPIFEKAHRTGYMTGYISPAICKLARLSSVTIADWKGISGEIPRCITTLPFLRIIDLIGNRISGTIPSDIGRLHRLTVLNVADNLISGTIPASLTNLTSLMHLDLRNNHISGPISRNFGRLRMLSRALLSGNLLSGPIPGSVSQIYRLADLDLSRNQISGPIPESLGKMAVLSTLNLDMNKLSGPIPVSLFSSGISDLNLSRNALEGNIPDAFGVRSYFTVLDLSYNNLKGPIPKSISSASYIGHLDLSHNHLCGKIPVGSPFDHLEASSFVYNDCLCGKPLKPC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0403 365 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515
Ssu8g0403 365 Pfam Leucine rich repeat 132 190 IPR001611 GO:0005515
Ssu8g0403 365 SUPERFAMILY L domain-like 22 364 - -
Ssu8g0403 365 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 365 - -
Ssu8g0403 365 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Ssu8g0403 365 Gene3D Ribonuclease Inhibitor 25 191 IPR032675 -
Ssu8g0403 365 Gene3D Ribonuclease Inhibitor 192 273 IPR032675 -
Ssu8g0403 365 Gene3D Ribonuclease Inhibitor 275 365 IPR032675 -
Ssu8g0403 365 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 6 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0403 Ssu-Chr8 6486303 6487400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0403 66 365 Receptor kinase-like Gene Family AT5G46330 35.312 3.70e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0403 - - gmx:100804739 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0403 8 6486303 6487400 Ssu8g0403 8 6486303 6487400 ECH
Ssu8g0403 8 6486303 6487400 Ssu3g2707 3 81009760 81010824 ECH
Ssu8g0403 8 6486303 6487400 Ssu3g2708 3 81022592 81023686 PCT