Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2708 ATGGGTGGAGTTTGGTTCACGCCGCTAACGGCGCTGTTACTGCTCGCACTTTCCTCCGCCGTCAGCTCGTGTCCGCCGTCGGAGCTGGCGGCGCTGCTGGCCTTCAAATCCGCTCTCCGGGACGCTAACGGCGGCATATTCAACTCTTGGACCGGCGCCGACTGCTGCCACAACTGGTACGGCGTCGCCTGCGACCGCAACTCTCGCCGCGTCGCCGAAATCAGCCTCCGCGCCGGTCCCGTCTACACCACATTTGAAAAACCTTTCCGTCCCGGCTACATGTCCGGTCAAATCTCGCCGGAGATTTGCAAGCTCACGCGCCTCTCCAGCCTCATCATCACCGACTGGCAGGGAATCTCCGGCGAGATCCCGCGCTGCATCTCCTCCCTTTCTTTCCTTCGCATCATCGACCTCACCGGAAACCGCATCTCCGGCACTCTCCCCGCCGACATTGGAAGGCTTCAGCAGCTGACTCTGCTGAGCGCCGCCGATAACCTCATCGCCGGCGAAATCCCGCCGTTGTTGACGAGCGTGACCAGTTTGATGCATCTTGACCTCCACAACAACCGGATCTCCGGGCCCATCCCGCAGGAGTTGGACCGGCTTCAAATGCTGAGCCGGGCCCTTTTGAGCGCGAACGAAATTAGTGGGCCCATCCCGGGGTCAATCTGTCGAATATATCGTCTCGTGGATCTGGATCTGTCTAAGAACCAGTTATCCGGGCCCATACCAGAGTCATTGGGCCGAATGGCGGTTCTGTCCACGTTGAAGTTGGACACGAACAAGCTTTCCGGAAGGATACCTGCGAGCCTCTTGGGCTCGGGTGTCAGTGAGTTGAACTTGAGCCACAACATGTTGGAGGGTAATATACCCGATTCCTTTGGGGGTACTTGTTATTTCACGTTACTGGACTTATCGTATAATAACCTCAAGGGTCCAATACCCAAATCCATGTCTTCCGCTTCCTACATTGGCTACTTGGACGTCAGCCACAACCACCTCTGCGGCCCAATTCCCAGCAGCTACAGTAACACCGATGCGTCGTCGTTTGCTTACAACGAATGCCTCTGCGGGAAGCCACTCAAAGCTTGCTAG 1095 0.5726 MGGVWFTPLTALLLLALSSAVSSCPPSELAALLAFKSALRDANGGIFNSWTGADCCHNWYGVACDRNSRRVAEISLRAGPVYTTFEKPFRPGYMSGQISPEICKLTRLSSLIITDWQGISGEIPRCISSLSFLRIIDLTGNRISGTLPADIGRLQQLTLLSAADNLIAGEIPPLLTSVTSLMHLDLHNNRISGPIPQELDRLQMLSRALLSANEISGPIPGSICRIYRLVDLDLSKNQLSGPIPESLGRMAVLSTLKLDTNKLSGRIPASLLGSGVSELNLSHNMLEGNIPDSFGGTCYFTLLDLSYNNLKGPIPKSMSSASYIGYLDVSHNHLCGPIPSSYSNTDASSFAYNECLCGKPLKAC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2708 364 Gene3D Ribonuclease Inhibitor 21 89 IPR032675 -
Ssu3g2708 364 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 364 - -
Ssu3g2708 364 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Ssu3g2708 364 SUPERFAMILY L domain-like 23 360 - -
Ssu3g2708 364 Gene3D Ribonuclease Inhibitor 92 364 IPR032675 -
Ssu3g2708 364 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 6 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2708 Ssu-Chr3 81022592 81023686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2708 110 364 Receptor kinase-like Gene Family AT4G08850 36.604 1.26e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2708 - - gmx:100804365 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0403 8 6486303 6487400 Ssu3g2708 3 81022592 81023686 PCT