Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0257 ATGGACAGAATCCATTCCTGCAGGCAGGTTGCTGCAATGAAACAGTCCCTCTTTGATCAGGGACATCTGGATGAGCAGTTTATCCAACTAGAAGAATTGCAGGATGATGCTAATCCTAACTTTGTTGAGGAAATTGTCACTCTCTACTACCGTGATTCATCCAGGCTTATCTCAAACTTGGAACAGACACTGGAAAGGAACCCACTGGATTTCAACAAGCTTGACACAATTATGCACCAGTTTACAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAATGCACTCTGTTTAGGGAATATTGCACGGCAAGAAATGCAGAAGGGTAA 336 0.4405 MDRIHSCRQVAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLEQTLERNPLDFNKLDTIMHQFTGSSSSIGAKKVKAECTLFREYCTARNAEG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0257 111 Pfam Hpt domain 44 108 IPR008207 GO:0000160
Ssu8g0257 111 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 111 IPR008207 GO:0000160
Ssu8g0257 111 PANTHER - 6 111 IPR045871 GO:0000160|GO:0009927|GO:0043424
Ssu8g0257 111 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 6 111 - -
Ssu8g0257 111 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 110 IPR036641 GO:0000160
Ssu8g0257 111 Gene3D HPT domain 1 111 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0257 Ssu-Chr8 3816041 3816738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0257 K14490 - gmx:100800310 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3314 4 83428315 83431935 Ssu8g0257 8 3816041 3816738 ECH
Ssu8g0257 8 3816041 3816738 Ssu8g0257 8 3816041 3816738 ECH
Ssu8g0257 8 3816041 3816738 Ssu1g3254 1 84767180 84770476 ECH
Ssu8g0257 8 3816041 3816738 Ssu4g3314 4 83428315 83431935 PCT