Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3314 ATGTTCTGTACTGTAGTAATGTTCCCTTATCGACATAACGTTAATGCGATGCTCAATGATGGCCCCCGCAGTTCCGTACGGCCACTTTTTTTGCGgctAAACCAATCCCGCAGGCAGGTTGATGCAATGAAACAGTCCCTTTTTGATCAGGGGTTACTGGATGAACAGTTTATCCAACTGGAAGAACTGCAGGATGATGCAAATCCTAACTTTGTTGAGGAAATTGTGACTCTTCACTACCGTGATTCATCCCGGCTTATCTCAAGCATAGAGCAGGCTCtCAAAGAGAGGAACCCTCTGGATTTCAACAAGCTGGACACACTTATGCATCAGTTCATAGGAAGCAGCTCCAGCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTGTTCAGGGAATATTGCAGGGCAGGAAATGCAGAAGGaTGCATGAGGAGCTTCCAACAGTTGAAGAAAGAATATGCTGCACTGAGAAAGAAACTTGAAGCTTATTTTCAGTTGGCCAGGCAGGCTGGACCCCAGGAAACAGCATGTCGCTCCAAATGA 546 0.4579 MFCTVVMFPYRHNVNAMLNDGPRSSVRPLFLRLNQSRRQVDAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISSIEQALKERNPLDFNKLDTLMHQFIGSSSSIGAKKVKAECNLFREYCRAGNAEGCMRSFQQLKKEYAALRKKLEAYFQLARQAGPQETACRSK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3314 181 Gene3D HPT domain 31 177 IPR036641 GO:0000160
Ssu4g3314 181 Coils Coil 140 167 - -
Ssu4g3314 181 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 36 170 IPR036641 GO:0000160
Ssu4g3314 181 Pfam Hpt domain 80 158 IPR008207 GO:0000160
Ssu4g3314 181 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 68 164 IPR008207 GO:0000160
Ssu4g3314 181 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 34 177 - -
Ssu4g3314 181 PANTHER - 34 177 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3314 Ssu-Chr4 83428315 83431935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3314 K14490 - gmx:100798055 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3314 4 83428315 83431935 Ssu8g0257 8 3816041 3816738 ECH
Ssu4g3314 4 83428315 83431935 Ssu4g3314 4 83428315 83431935 ECH
Ssu4g3314 4 83428315 83431935 Ssu1g3254 1 84767180 84770476 ECH
Ssu8g0257 8 3816041 3816738 Ssu4g3314 4 83428315 83431935 PCT