Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3254 ATGGACAAGACTAAGTTGAGACAACGGGCCGTCTTCATGCGAAGTTCACTCTTTGATGAGGGGTTCCTTGACGAGCAATTCATTCAGTTAGAGGAATTGCAAGACAATGTTAATCCCAATTTTGTGGAAGAAATTGTGACCCTTTTCTACAGCGACTCTGTAAGACTGATCTACAACATAGAACGAGCACTGATGAGTAACCCACCGAATTTCACCAAGCTAGATGATTACATGCATCAATTCAAGGGTAGTTGCTCAAGCATCGGAGCAAAGAAGGTGAAGAATGAATGTACCAGATTCGGTGAACATTGCGCAGCAGAAAACTTTGAGGGATGCTTCAGGACTTTCCAACAAATCAATATAGAGTATACGACTTTGAAGAAGAAGCTCGAGACTTACTTTAAGGTTTGGTATAGGTCTGTTGTTGCATTCCACACCTTGCCACGCTTGAGCGAGTTTTGGAAAGGGGTACCTGTGAGGAGTTCTCTAGAAAGGGAAAAAGAGAGGGGAGGGTTTGGACAGAGGAGGAGGAGATAG 537 0.4376 MDKTKLRQRAVFMRSSLFDEGFLDEQFIQLEELQDNVNPNFVEEIVTLFYSDSVRLIYNIERALMSNPPNFTKLDDYMHQFKGSCSSIGAKKVKNECTRFGEHCAAENFEGCFRTFQQINIEYTTLKKKLETYFKVWYRSVVAFHTLPRLSEFWKGVPVRSSLEREKERGGFGQRRRR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3254 178 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Ssu1g3254 178 Pfam Hpt domain 44 102 IPR008207 GO:0000160
Ssu1g3254 178 PANTHER - 3 139 IPR045871 GO:0000160|GO:0009927|GO:0043424
Ssu1g3254 178 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 139 - -
Ssu1g3254 178 CDD HPT 42 123 IPR008207 GO:0000160
Ssu1g3254 178 Gene3D HPT domain 2 150 IPR036641 GO:0000160
Ssu1g3254 178 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 14 136 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3254 Ssu-Chr1 84767180 84770476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3254 K14490 - gmx:100780856 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3254 1 84767180 84770476 Ssu1g3254 1 84767180 84770476 ECH
Ssu4g3314 4 83428315 83431935 Ssu1g3254 1 84767180 84770476 ECH
Ssu8g0257 8 3816041 3816738 Ssu1g3254 1 84767180 84770476 ECH